Codelink annotation error in Ubuntu 16.04
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@agaz-hussain-wani-7620
Last seen 3.5 years ago
India

My code is working fine on Ubuntu 14.04. But, when i migrated to Ubuntu 16.04, I get the following error for annotation with codelink package. The error comes when I select the annotation database.

select(hwgcod.db, ......, c("SYMBOL"), "ACCNUM")

Error:

Warning: Error in UseMethod: no applicable method for 'select_' applied to an object of class "c('ChipDb', 'AnnotationDb', 'envRefClass', '.environment', 'refClass', 'environment', 'refObject', 'AssayData')"

I have all the required packages installed. Is Ubuntu 16.04 the reason or there is some other reason?

codelink annotation ubuntu • 661 views
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@martin-morgan-1513
Last seen 3 months ago
United States

Likely you have loaded dplyr or similar after the annotation package, and there is a symbol collision; try AnnotationDbi::select(...).

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Great, Martin Morgan. It works.

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