Question: Codelink annotation error in Ubuntu 16.04
2
gravatar for Agaz Hussain Wani
3.0 years ago by
India
Agaz Hussain Wani260 wrote:

My code is working fine on Ubuntu 14.04. But, when i migrated to Ubuntu 16.04, I get the following error for annotation with codelink package. The error comes when I select the annotation database.

select(hwgcod.db, ......, c("SYMBOL"), "ACCNUM")

Error:

Warning: Error in UseMethod: no applicable method for 'select_' applied to an object of class "c('ChipDb', 'AnnotationDb', 'envRefClass', '.environment', 'refClass', 'environment', 'refObject', 'AssayData')"

I have all the required packages installed. Is Ubuntu 16.04 the reason or there is some other reason?

annotation codelink ubuntu • 523 views
ADD COMMENTlink modified 3.0 years ago by Martin Morgan ♦♦ 24k • written 3.0 years ago by Agaz Hussain Wani260
Answer: Codelink annotation error in Ubuntu 16.04
3
gravatar for Martin Morgan
3.0 years ago by
Martin Morgan ♦♦ 24k
United States
Martin Morgan ♦♦ 24k wrote:

Likely you have loaded dplyr or similar after the annotation package, and there is a symbol collision; try AnnotationDbi::select(...).

ADD COMMENTlink modified 3.0 years ago • written 3.0 years ago by Martin Morgan ♦♦ 24k

Great, Martin Morgan. It works.

ADD REPLYlink modified 3.0 years ago • written 3.0 years ago by Agaz Hussain Wani260
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