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cr
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@cr-12159
Last seen 5.2 years ago
Hi,
I try to install the package "flowClust" but I can't and I have this warning message " In install.packages(pkgs = doing, lib = lib, ...) : installation of package 'flowClust' had non-zero exit status".
I have done this : source("http://bioconductor.org/biocLite.R")
biocLite("flowClust", type = "source")
My version is R3.2.4
Thanks,
Céline
If you are using Windows, do you really want to install the package from source?
The error message seems too short to me, and you should your full sessionInfo() in order to get meaningful help.
Thank you for your answer.
I unsuccessfully tried : install.package("flowClust") and to install from the zip file without success. That's why i tried from the source.
I have got this Warning message:
package 'flowClust' is not available (for R version 3.2.4 Revised)
With SessionInfo() :
sessionInfo()
R version 3.2.4 Revised (2016-03-16 r70336)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 7 x64 (build 7601) Service Pack 1
locale:
[1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252 LC_MONETARY=French_France.1252 LC_NUMERIC=C
[5] LC_TIME=French_France.1252
attached base packages:
[1] parallel stats graphics grDevices utils datasets methods base
other attached packages:
[1] BiocInstaller_1.20.3 flowViz_1.34.1 lattice_0.20-34 flowCore_1.36.9 corrplot_0.77 reshape2_1.4.2
[7] tidyr_0.6.0 calibrate_1.7.2 MASS_7.3-45 rj_2.0.4-2
loaded via a namespace (and not attached):
Error in x[["Version"]] : subscript out of bounds
In addition: Warning message:
In FUN(X[[i]], ...) :
DESCRIPTION file of package 'robustbase' is missing or broken
When I run this, I have no problem:
> pdb <- available.packages()
> deps <- tools::package_dependencies(packages = "robustbase", pdb)
> deps
$robustbase
[1] "stats" "graphics" "utils" "methods" "DEoptimR"
It's a Bioconductor package so from the package landing page
source("https://bioconductor.org/biocLite.R") biocLite("flowClust")Exactly, any Bioc package installed with "install.package()" will lead to a "not available" error.
So, do try Martin's command please.