error during installation of 'DEseq2' package
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su • 0
@su-24870
Last seen 22 months ago

Hello there, I came across an error while installing pacakge 'DEseq2' using BiocManager::install("DEseq2").

Bioconductor version 3.12 (BiocManager 1.30.10), R 4.0.4 (2021-02-15)
Installing package(s) 'DESeq2'
trying URL 'https://bioconductor.org/packages/3.12/bioc/bin/macosx/contrib/4.0/DESeq2_1.30.1.tgz'


Anyone knows what was happening here, was there a probelm regarding internet or soemthing else?

DESeq2 Install • 547 views
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@herve-pages-1542
Last seen 1 day ago
Seattle, WA, United States

Hi,

We're not able to reproduce this. Can you try this again and show us the full output of the BiocManager::install("DEseq2") command?

FWIW the fact that these URLs cannot be accessed is expected (and is normally silently ignored), and it should not affect the final outcome i.e. you should still see that DESeq2 gets downloaded and installed.

Thanks,

H.