Outliers
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nolwenn • 0
@c3b2b52f
Last seen 16 days ago
France

Hello, I try to find outliers in my RNA-seq data (sample in columns and gene in row). I run se <- deseq(). I use assays(se)[["originalCounts"]] but it return NULL. Is it because I don't have any outliers or because the function didn't work on my data ?

outliers Deseq2 • 96 views
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@kevin
Last seen 1 hour ago

Hi, se <- deseq() will not do anything. This function does not exist. Did you mean DESeq()?

Can you please elaborate on what you are trying to do?

Kevin

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Yes sorry. I would like to prepare my data to do a survival analysis. For this, I keep differentially expressed genes that have been pre-filtered. I will want to be sure not to keep data with outliers for my study.