Bioinformatics Answers

Showing : outliers • reset

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RNASeqData DESeq2 Outliers

8 days ago paty ▴ 20

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outliers Deseq2

27 days ago nolwenn • 0

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365

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deseq2 outliers cooks cooks distance

updated 8 months ago by Michael Love 32k • written 9 months ago by donnenfieldjonah • 0

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657

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deseq2 deseq rnaseq outliers count outliers

updated 2.4 years ago by Michael Love 32k • written 2.4 years ago by lefeverde ▴ 10

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562

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deseq2 differential gene expression outliers

updated 2.8 years ago by Ryan C. Thompson 7.6k • written 2.8 years ago by CE ▴ 10

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439

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Deseq2 outliers cookscutoff

updated 2.8 years ago by Michael Love 32k • written 2.8 years ago by jaime.alvarez.benayas • 0

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421

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minfi normalization outliers dna methylation densityplot

2.8 years ago peter.fransquet • 0

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268

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deseq2 outliers

updated 3.2 years ago by Michael Love 32k • written 3.2 years ago by Moose123 • 0

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615

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deseq2 outliers version

updated 3.2 years ago by Michael Love 32k • written 3.2 years ago by aec ▴ 70

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444

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zero counts deseq2 odd results outliers

updated 3.2 years ago by Michael Love 32k • written 3.2 years ago by aec ▴ 70

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397

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outliers deseq2 logfoldchange

3.3 years ago lirongrossmann ▴ 60

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830

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deseq2 outliers

3.4 years ago paul.alto ▴ 50

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2.2k

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deseq2 filtering outliers count outliers

updated 3.7 years ago by Wolfgang Huber 13k • written 3.7 years ago by heikki.sarin • 0

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1.2k

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deseq2 combat outliers NMF

updated 3.9 years ago by Michael Love 32k • written 3.9 years ago by noname • 0

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551

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outliers rna microarray

updated 4.0 years ago by chris86 ▴ 390 • written 4.0 years ago by bhgyu ▴ 30

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1.1k

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deseq2 outliers RNAseq differential gene expression

4.1 years ago cajawe • 0

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866

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deseq2 outliers differential gene expression

updated 4.3 years ago by Michael Love 32k • written 4.3 years ago by gregory.l.stone ▴ 10

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1.8k

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deseq2 differential gene expression outliers bioconductor

updated 4.3 years ago by Michael Love 32k • written 4.3 years ago by gregory.l.stone ▴ 10

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582

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deseq2 deseq outliers

updated 4.8 years ago by Michael Love 32k • written 4.8 years ago by akaever ▴ 30

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1.1k

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microarray PCA outliers sample outliers limma

updated 5.3 years ago by Aaron Lun ★ 26k • written 5.3 years ago by serpalma.v ▴ 60

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10k

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WGCNA Sample Size Outliers

updated 5.7 years ago by mh.manoj • 0 • written 6.2 years ago by brohawndg ▴ 80

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1.5k

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pscl outliers

updated 6.1 years ago by Sean Davis 21k • written 6.1 years ago by mrk.carty ▴ 30

22 results • Page 1 of 1

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Comment: Limma paired analysis design question by jefflincoln4 • 0

Thank you Gordon. One more thing, why use the log of blood iron concentration?

Answer: Limma paired analysis design question by Gordon Smyth 42k

Just put (log) blood iron concentration and `pair` in the design matrix. limma will work with differences automatically -- there's no need…

Comment: Extracting the findPalindrome() results by Hervé Pagès 14k

Also, you have a point: the output of `Biostrings::findPalindromes()` is an XStringViews object and `as.data.frame()` does a poor job on th…

Comment: Compute fgsea with my own database with R version 4.0.2 by assaron ▴ 190

I'm not sure what would be the best course of action in your case, if there is one at all, but I'd suggest to keep the ranking on the gene-…

Comment: Error installing Deseq2 by ATpoint ▴ 590

Go through the error logs and find the first error, this is where you have to start debugging, this here is just the consequences of the in…