I just updated my R version from 4.0.2 to 4.1.1. I could install packages by BiocManager::install() while I was using R 4.0.2. However, I cannot install packages by BiocManager::install() while I am using R 4.1.1. I am able to install packages by using install.packages, but BiocManager::install() does not work in my computer for R 4.1.1. Please see the error message below.
Thank you very much in advance! Kindest regards, Julie
> install.packages("BiocManager") Installing package into ‘C:/Users/julie/Documents/R/win-library/4.1’ (as ‘lib’ is unspecified) trying URL 'https://cran.rstudio.com/bin/windows/contrib/4.1/BiocManager_1.30.16.zip' Content type 'application/zip' length 328865 bytes (321 KB) downloaded 321 KB package ‘BiocManager’ successfully unpacked and MD5 sums checked The downloaded binary packages are in C:\Users\julie\AppData\Local\Temp\Rtmp6naDm7\downloaded_packages > BiocManager::install("limma") 'getOption("repos")' replaces Bioconductor standard repositories, see '?repositories' for details replacement repositories: CRAN: https://cran.rstudio.com/ sessionInfo( ) R version 4.1.1 (2021-08-10) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 19043) Matrix products: default locale:  LC_COLLATE=Dutch_Belgium.1252 LC_CTYPE=Dutch_Belgium.1252  LC_MONETARY=Dutch_Belgium.1252 LC_NUMERIC=C  LC_TIME=Dutch_Belgium.1252 attached base packages:  stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached):  BiocManager_1.30.16 compiler_4.1.1 fastmap_1.1.0 htmltools_0.5.2  tools_4.1.1 yaml_2.2.1 rmarkdown_2.11 knitr_1.36  xfun_0.26 digest_0.6.28 rlang_0.4.11 evaluate_0.14 >