Merging two SummarizedExperiment dataesets after downloading using TCGAbiolinks
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@syednajeebashraf-19986
Last seen 8 weeks ago
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Dear All,

I am trying to merge two TCGA summarizedexperiment objects but I am getting below error. I have downloaded both using TCGAbiolinks. Can someone please help me with this?

Error in .format_mismatch_message(x_colnames, object_colnames) : the DataFrame objects to rbind do not have the same column names ('tumor_descriptor', 'composition', 'ajcc_clinical_m', ... vs 'ajcc_staging_system_edition', 'ajcc_pathologic_m', 'ajcc_clinical_t', ...)

Code should be placed in three backticks as shown below


a=get(load("scripts/TCGA-ACC.rda"))
b=get(load("scripts/TCGA-BLCA.rda"))
cbind(a,b)

sessionInfo( )
TCGAbiolinks TCGAbiolinksGUI.data SummarizedExperiment • 124 views
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