Merging two SummarizedExperiment dataesets after downloading using TCGAbiolinks
0
0
Entering edit mode
@syednajeebashraf-19986
Last seen 21 months ago
Qatar

Dear All,

I am trying to merge two TCGA summarizedexperiment objects but I am getting below error. I have downloaded both using TCGAbiolinks. Can someone please help me with this?

Error in .format_mismatch_message(x_colnames, object_colnames) : the DataFrame objects to rbind do not have the same column names ('tumor_descriptor', 'composition', 'ajcc_clinical_m', ... vs 'ajcc_staging_system_edition', 'ajcc_pathologic_m', 'ajcc_clinical_t', ...)

Code should be placed in three backticks as shown below


a=get(load("scripts/TCGA-ACC.rda"))
b=get(load("scripts/TCGA-BLCA.rda"))
cbind(a,b)

sessionInfo( )
TCGAbiolinks TCGAbiolinksGUI.data SummarizedExperiment • 537 views
ADD COMMENT

Login before adding your answer.

Traffic: 1029 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6