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Comment: How to annotate a limma Elist raw class object with an annotation file
by
James W. MacDonald
67k
Oh right. My bad. Good for you though, figuring out that it's ENTREZID, not ENTREZGENE. You did a good job of reading the error message in …
Comment: Differential Expression Genes as Independent Variables
by
James W. MacDonald
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Both true, so a poor suggestion on my part.
I am also unclear as to how one would use a single observation (the gene expression measures)…
Answer: How to annotate a limma Elist raw class object with an annotation file
by
giulia.gentile
•
0
Good afternoon,
Thank you for your explanation and suggestion to overcome the issue by annotating directly from the genome-wide annotation…
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★
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IIRC loading ~million cells into memory took about 3-5 minutes, but that was with a rather slow filesystem (HDD on a HPC), so YMMV dependin…
Comment: Differential Expression Genes as Independent Variables
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Does not allow mixed models. And is for a different purpose to what your aims seem to be: it's purely for prediction rather than for testin…
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