getBM Error with certain attribute combinations
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Entering edit mode
Luisa • 0
@998fa27d
Last seen 3 months ago
United States

Hi!

I'm trying to pull a certain combination of attributes from biomaRt, but keep getting the same error

     sapiens_mart = useEnsembl("ensembl", dataset = "hsapiens_gene_ensembl")
     anno_mart_go <- getBM(mart = sapiens_mart, attributes = c('ensembl_gene_id', 'external_gene_name', 'go_id'))

Error

Error in curl::curl_fetch_memory(url, handle = handle) : 
  Timeout was reached: [www.ensembl.org:443] Operation timed out after 300000 milliseconds with 9869172 bytes received

Any thought on how to fix this issue? Thanks!

biomaRt ensembldb • 136 views
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