Should I set a seed prior to running AUCell?
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Lucy ▴ 60
@lucy-17014
Last seen 6 weeks ago
United Kingdom

Hi,

Is it recommended to set a seed before running AUCell build rankings if you want to generate the same output each time you run it? From what I understand, genes with the same expression level are randomly ordered.

Best wishes,
Lucy

AUCell • 479 views
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ATpoint ★ 4.2k
@atpoint-13662
Last seen 7 minutes ago
Germany

Yes, absolutely. You can play with the example data at ?AUCell_buildRankings to see that results change without a seed, that is critical for reproducibilty.

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