find tandem repeats in DNA
1
0
Entering edit mode
me-nobody • 0
@07a6aebe
Last seen 15 months ago
United Kingdom

I want to find tandem repeats in DNA. I have access to CRAM file and the VCF file. I initially tried to get the insertions from the VCF file, but I am not sure if the variant caller has included all the repeats and if that is the correct strategy. So I want to find these repeats in the CRAM file also to be certain. are there any packages for this? I am new in this kind of analysis and will be very thankful for your help

DNA repeats • 477 views
ADD COMMENT
0
Entering edit mode
ATpoint ★ 4.0k
@atpoint-13662
Last seen 3 days ago
Germany

This is not related to Bioconductor so I suggest posting at biostars.org.

ADD COMMENT
0
Entering edit mode

OK. Thank you very much!

ADD REPLY

Login before adding your answer.

Traffic: 611 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6