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DNA
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622
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normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
12 weeks ago
user_bioinfo
• 0
0
votes
2
replies
897
views
find tandem repeats in DNA
DNA
repeats
2.3 years ago
me-nobody
• 0
0
votes
1
reply
1.2k
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 3.5 years ago by
James W. MacDonald
68k • written 3.5 years ago by
HELEN
• 0
1
vote
1
reply
1.4k
views
How to use ENCprime via coRdon with a custom background sequence set?
software
codon
usage
bias
dna
updated 5.5 years ago by
anamaria
▴ 10 • written 5.5 years ago by
jol.espinoz
▴ 40
0
votes
1
reply
796
views
what do these DNA alphabet means ? "-", "+", "."
DNA
alphabet
updated 6.2 years ago by
James W. MacDonald
68k • written 6.2 years ago by
fjia304
• 0
2
votes
3
replies
2.3k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 7.4 years ago by
Erik Wright
▴ 150 • written 7.4 years ago by
reubenmcgregor88
• 0
0
votes
5
replies
3.0k
views
How to prevent readDNAStringSet() function from switching masked sequences (lowercase) to uppercase sequence?
biostrings
mask
repeatmasker
DNA
updated 4.3 years ago by
ivantsers
• 0 • written 7.5 years ago by
beausoleilmo
• 0
0
votes
1
reply
1.7k
views
ABI HRM data analysis
ABI
sequence
DNA
melting
curve
updated 10.0 years ago by
Hervé Pagès
16k • written 10.0 years ago by
Prasanth
▴ 20
8 results • Page
1 of 1
Recent ...
Replies
Comment: Check removeBatchEffect effectiveness
by
Gordon Smyth
52k
Both of your matrices, `design_batcheffects` and `design_timepoint`, span the intercept term, which will cause a warning about NA coefficie…
Comment: DiffBind - question on the use of filtered or unfiltered input data
by
sloperun3az
• 0
Your essay was beneficial to me, and I found it to be very useful. Thank you for writing it. You give a wealth of knowledge that is not onl…
Comment: compute_fasta_digest does not match Salmon index hash
by
sloperun3az
• 0
The people who are reading your work are not taken into consideration, even though you appear to have a solid understanding of the subject …
Comment: parameters of filterByExpr
by
Paul Harrison
▴ 110
It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…
Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Gordon Smyth
52k
voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…
Votes
Comment: Check removeBatchEffect effectiveness
Answer: Check removeBatchEffect effectiveness
A: what should I do with many zero counts from Salmon quantification
Comment: parameters of filterByExpr
GAlignments Cigar to GRanges
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massimo
• 0
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to
Gordon Smyth
52k
Popular Question
to
caroline.zanchi
▴ 10
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to
James W. MacDonald
68k
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Hervé Pagès
16k
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