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DNA
•
reset
0
votes
2
replies
132
views
find tandem repeats in DNA
DNA
repeats
7 weeks ago
me-nobody
• 0
0
votes
1
reply
365
views
TFBSTools and readFASTA
TFBSTools
DNASeqData
readFASTA
DNA
RStudio
updated 16 months ago by
James W. MacDonald
62k • written 16 months ago by
HELEN
• 0
1
vote
1
reply
613
views
How to use ENCprime via coRdon with a custom background sequence set?
software
codon
usage
bias
dna
updated 3.3 years ago by
anamaria
▴ 10 • written 3.3 years ago by
jol.espinoz
▴ 40
0
votes
1
reply
377
views
what do these DNA alphabet means ? "-", "+", "."
DNA
alphabet
updated 4.0 years ago by
James W. MacDonald
62k • written 4.0 years ago by
fjia304
• 0
2
votes
3
replies
1.2k
views
Is it possible to import a multiple fasta alignemnt (.mfa) file into DECIPHER?
decipher
DNA
biostrings
updated 5.3 years ago by
Erik Wright
▴ 150 • written 5.3 years ago by
reubenmcgregor88
• 0
0
votes
5
replies
1.9k
views
How to prevent readDNAStringSet() function from switching masked sequences (lowercase) to uppercase sequence?
biostrings
mask
repeatmasker
DNA
updated 2.2 years ago by
ivantsers
• 0 • written 5.4 years ago by
beausoleilmo
• 0
0
votes
1
reply
993
views
ABI HRM data analysis
ABI
sequence
DNA
melting
curve
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
Prasanth
▴ 20
7 results • Page
1 of 1
Recent ...
Replies
Comment: How to extract proteins from PCs in plot_pca in DEP package
by
Basti
▴ 700
Which information do you want precisely ? plot_pca is just a wrapper for PCA visualization, but it applies prcomp to perform PCA : https://…
Comment: [limma::kegga] Pathway names all NA
by
Gordon Smyth
47k
The reason why installing limma didn't solve the problem was because you were using Bioconductor 3.15 rather than the current release, whic…
Comment: [limma::kegga] Pathway names all NA
by
andrewsm
• 0
Thank you Gordon for the quick response. I saw something along those lines in the NEWS notes so did try ```{r} BiocManager:install("limma"…
Comment: Time-course, comparison of two groups
by
Gordon Smyth
47k
With 4 time points there are 3 df between time points, so your spline analysis with `df=3` is exactly the same as if you had treated time a…
Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
by
tahir.msajid
• 0
Hi Rory, I am normalizing the counts with the following options: `normalized <- dba.normalize(counts, method=DBA_DESEQ2, normalize = DBA_N…
Votes
Comment: Scaling DEXSeq estimateDispersions for large datasets, glmGamPoi?
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Are polynomial contrasts for a time factor possible in DESeq2?
Are polynomial contrasts for a time factor possible in DESeq2?
Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R
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Guido Hooiveld
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Gordon Smyth
47k
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Robert Castelo
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