find tandem repeats in DNA
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me-nobody • 0
@07a6aebe
Last seen 13 months ago
United Kingdom

I want to find tandem repeats in DNA. I have access to CRAM file and the VCF file. I initially tried to get the insertions from the VCF file, but I am not sure if the variant caller has included all the repeats and if that is the correct strategy. So I want to find these repeats in the CRAM file also to be certain. are there any packages for this? I am new in this kind of analysis and will be very thankful for your help

DNA repeats • 450 views
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ATpoint ★ 3.9k
@atpoint-13662
Last seen 11 hours ago
Germany

This is not related to Bioconductor so I suggest posting at biostars.org.

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OK. Thank you very much!

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