Can QSEA package be used for computing sample-specific methylation values? I need tumor and normal samples specific methylation values for given genomic window. The enrichment-based protocol [cfMeDIP-seq] has been followed for sequencing.
As an experimental biologist, I have limited understanding of QSEA package. But I learnt from the tutorial and example dataset, that QSEA identifies DMRs.Therefore, I think QSEA can compute sample-specific methylation values. I need help with the function/command and input data structure that can be used to identify sample-specific methylation values.
Any help is highly appreciated. Thanks in advance.