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DNAMethylation
•
reset
0
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7
replies
624
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
3 months ago
hortense96
• 0
0
votes
0
replies
165
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
3 months ago
Macsue
• 0
0
votes
6
replies
519
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 3 months ago by
Tim Peters
▴ 190 • written 3 months ago by
s.malik
• 0
0
votes
1
reply
456
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
updated 4 months ago by
belinda.phipson
▴ 40 • written 4 months ago by
s.malik
• 0
0
votes
4
replies
773
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 5 months ago by
James W. MacDonald
66k • written 5 months ago by
rae.alshammari
▴ 10
1
vote
4
replies
609
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 5 months ago by
Gordon Smyth
51k • written 5 months ago by
Jitendra
▴ 10
0
votes
1
reply
259
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
updated 4 months ago by
Simon Pearce
• 0 • written 5 months ago by
User3088
• 0
1
vote
4
replies
699
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
5 months ago
mikat
• 0
0
votes
1
reply
570
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
15 months ago
Grace
• 0
2
votes
6
replies
1.2k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 15 months ago by
Tim Peters
▴ 190 • written 15 months ago by
Grace
• 0
2
votes
6
replies
1.1k
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 16 months ago by
belinda.phipson
▴ 40 • written 16 months ago by
Joana
• 0
0
votes
0
replies
614
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
23 months ago
calen.p.ryan
• 0
3
votes
8
replies
1.5k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.1 years ago
rtrivedi1
▴ 10
3
votes
5
replies
2.4k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 5 months ago by
sup0903
• 0 • written 3.6 years ago by
Hongbii
• 0
14 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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Lluís Revilla Sancho
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42k
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★ 1.1k
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Gordon Smyth
51k
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