Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
qsea
•
reset
0
votes
0
replies
314
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
12 months ago
User3088
• 0
0
votes
1
reply
702
views
QSEA:Error in h(simpleError(msg, call))
qsea
17 months ago
kf
• 0
1
vote
2
replies
720
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 21 months ago by
Researcher
▴ 10
0
votes
2
replies
831
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
2.0 years ago • updated 12 months ago
User3088
• 0
9
votes
18
replies
4.9k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 2.1 years ago by
Matthias Lienhard
▴ 280 • written 8.9 years ago by
justinburgener
▴ 20
2
votes
1
reply
976
views
QSEA: normalisation >> sequencing preference
qsea
updated 3.0 years ago by
Matthias Lienhard
▴ 280 • written 3.0 years ago by
a.riediger
▴ 20
1
vote
1
reply
1.4k
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 3.0 years ago by
Matthias Lienhard
▴ 280 • written 3.0 years ago by
a.riediger
▴ 20
1
vote
4
replies
2.0k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 3.4 years ago by
Simon Pearce
• 0 • written 3.4 years ago by
a.riediger
▴ 20
0
votes
2
replies
1.4k
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 3.5 years ago by
Simon Pearce
• 0 • written 3.5 years ago by
Marianna
▴ 20
3
votes
8
replies
2.2k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
4.6 years ago
rtrivedi1
▴ 10
7
votes
9
replies
2.8k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
4.7 years ago
rtrivedi1
▴ 10
0
votes
1
reply
1.1k
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 4.7 years ago by
Matthias Lienhard
▴ 280 • written 4.9 years ago by
el466
• 0
1
vote
1
reply
1.5k
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 5.1 years ago by
Matthias Lienhard
▴ 280 • written 5.1 years ago by
mbk0asis
• 0
0
votes
2
replies
1.2k
views
Qsea - plotCoverage
Qsea
updated 5.8 years ago by
Matthias Lienhard
▴ 280 • written 5.8 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
1.6k
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 6.0 years ago by
Matthias Lienhard
▴ 280 • written 6.0 years ago by
Simon Pearce
• 0
0
votes
1
reply
1.1k
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 6.0 years ago by
Matthias Lienhard
▴ 280 • written 6.0 years ago by
gaurav4thareja
▴ 20
1
vote
4
replies
2.4k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 13 months ago by
Lukas
▴ 20 • written 6.5 years ago by
LNathanson
• 0
0
votes
0
replies
1.5k
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
7.3 years ago
saripalligautam86
▴ 10
0
votes
1
reply
1.2k
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 7.7 years ago by
Matthias Lienhard
▴ 280 • written 7.7 years ago by
apt.university
• 0
0
votes
8
replies
2.3k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 7.8 years ago by
Matthias Lienhard
▴ 280 • written 7.8 years ago by
wildist
• 0
0
votes
3
replies
1.7k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 8.0 years ago by
Matthias Lienhard
▴ 280 • written 8.0 years ago by
geekyvt
• 0
1
vote
2
replies
1.4k
views
QSEA: Error while addLibraryFactors
QSEA
updated 8.0 years ago by
Matthias Lienhard
▴ 280 • written 8.0 years ago by
geekyvt
• 0
1
vote
3
replies
1.8k
views
QSEA Error while loading the bam files
qsea
updated 8.0 years ago by
Matthias Lienhard
▴ 280 • written 8.0 years ago by
geekyvt
• 0
23 results • Page
1 of 1
Recent ...
Replies
Comment: DiffBind plot.profile error
by
a2sahaaaq2c
• 0
To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…
Comment: soGGi error
by
shepherl
4.3k
We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…
Comment: using limma trend workflow in CAMERA
by
Gordon Smyth
53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results
by
Tikaaa2sahaaaq2c
• 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA
by
A.Barden
▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Votes
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
Comment: using limma trend workflow in CAMERA
C: z-score with DESeq2?
Awards
• All
Popular Question
to
Guido Hooiveld
★ 4.1k
Popular Question
to
shepherl
4.3k
Popular Question
to
Steve Lianoglou
★ 13k
Teacher
to
Michael Love
43k
Supporter
to
fl
▴ 20
Locations
• All
WEHI, Melbourne, Australia,
52 minutes ago
United States,
1 hour ago
United States,
2 hours ago
United States,
2 hours ago
United States,
3 hours ago
Traffic: 924 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6