Hi,

I have a transcriptomic bam obtained from aligning nanopore transcriptome sequencing data to the cdna sequence. To visualize gene models etc (in IGV) I need to convert it to genomic coordinates and I was wondering how can I be able to do it using ensembldb?

Is there a way around without realigning the data to genome to get the coordinates using STAR etc?

This post does not concern Bioconductor software. Try biostars instead.