Showing : genome • reset
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readVCF requires the argument "genome". What does it stand for?
Genome readVcf VariantAnnotation
6 months ago naive • 0
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118
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Using R to compare whole genome sequences/FASTA files to find percent difference
Genome GWASdata
7 months ago Jocelyn • 0
2
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4
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252
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Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 19 months ago by 120 • written 19 months ago by • 0
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249
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Gviz UCSC tracks not visible
Gviz R UCSC Tracks genome locusplot
updated 23 months ago by ▴ 690 • written 23 months ago by • 0
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247
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Job: Post-doc fellow - Aparicio Lab
single cell bioinformatics genome sequencing Job
2.0 years ago jmaanaki • 0
2
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2
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472
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Filtering GFF3 file
annotation gff3 gff genome
updated 2.0 years ago by 11k • written 2.0 years ago by • 0
6
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4
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722
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the coordinates of exons of RefSeq or ENSEMBL genes
txdb genome exons
updated 2.1 years ago by 25k • written 2.1 years ago by ▴ 620
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
2.3 years ago jmaanaki • 0
1
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2
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390
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Gallus gallus package genome update release
genome novel package release
updated 2.6 years ago by 58k • written 2.6 years ago by • 0
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Multiple alignment of big DNA sequences files
multiplealignment genome
3.0 years ago Giuseppe ▴ 20
2
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673
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Building a reduced BSgenome.Gallus.UCSC.galGal 4 from Bioconductor
r build genome chicken-sheme
5.9 years ago pertille • 0
11 results • Page 1 of 1
Recent ...
Replies
Comment: voom flips the sign relative to log(cpm) by Gordon Smyth 43k
Cross posted to Biostars https://www.biostars.org/p/9490039/
Answer: voom flips the sign relative to log(cpm) by Gordon Smyth 43k
The difference has nothing to do with limma or voom. On the right you applied TMM library size normalization. On the left you did no librar…
Answer: error: cannot execute 'f951': execvp: No such file or directory when downloading by Michael Love 34k
The answer is going to depend on how you installed R and Bioconductor, what OS and system you are on.
Comment: At least one covariate is confounded with batch! Please remove confounded covari by James W. MacDonald 58k
The error you get from `ComBat` comes from the test ``` qr(design)$rank < ncol(design) ``` And inside of `nonEstimable` is, as one might …
Comment: Understanding output of Negative Binomial in DESeq2 by swbarnes2 ▴ 850
Cross posted at Biostars: https://www.biostars.org/p/9490151/
Votes
Answer: Effect size using likelihood ratio test in DESeq2
Comment: ggtree install
Answer: Warning messages on Apple M1 BigSur
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
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