Showing : genome • reset
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readVCF requires the argument "genome". What does it stand for?
Genome readVcf VariantAnnotation
3 months ago naive • 0
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75
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Using R to compare whole genome sequences/FASTA files to find percent difference
Genome GWASdata
4 months ago Jocelyn • 0
2
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4
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187
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Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 16 months ago by 120 • written 16 months ago by • 0
1
vote
1
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192
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Gviz UCSC tracks not visible
Gviz R UCSC Tracks genome locusplot
updated 20 months ago by ▴ 670 • written 20 months ago by • 0
0
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209
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Job: Post-doc fellow - Aparicio Lab
single cell bioinformatics genome sequencing Job
21 months ago jmaanaki • 0
2
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2
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382
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Filtering GFF3 file
annotation gff3 gff genome
updated 21 months ago by 11k • written 21 months ago by • 0
6
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4
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543
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the coordinates of exons of RefSeq or ENSEMBL genes
txdb genome exons
updated 22 months ago by 25k • written 22 months ago by ▴ 610
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225
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
2.1 years ago jmaanaki • 0
1
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2
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339
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Gallus gallus package genome update release
genome novel package release
updated 2.4 years ago by 57k • written 2.4 years ago by • 0
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360
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Multiple alignment of big DNA sequences files
multiplealignment genome
2.7 years ago Giuseppe ▴ 20
2
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3
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633
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Building a reduced BSgenome.Gallus.UCSC.galGal 4 from Bioconductor
r build genome chicken-sheme
5.6 years ago pertille • 0
11 results • Page 1 of 1
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Comment: Rsamtools: how to output base positions on reads by Martin Morgan 25k
Can you add to your question to provide a more complete example of the output that you are after? Have you explored the `pileup()` command?
Comment: IHW and correlated covariates by Michael Love 33k
hi Nikos, I have a new problem that would benefit IHW with two ordinal covariates, do you have any thoughts on approaching this while pres…
Comment: Determining number of genes in each module based on color in WGCNA package by schum266 • 0
For anyone who might be interested. I was able to figure this out. It's very easy.... just set numericLabels = FALSE. (*sigh*) ``` net = …
Comment: Research fellow in immunology by ATpoint ▴ 640
Try starting a new R session and then load the package again. If that fails then manually install ellipsis version 0.3.2 or greater. By the…
Answer: Creating the correct model to account for paired-samples (patient-effect) help n by Gordon Smyth 43k
In the limma User's Guide, Section 9.4.1 *Paired Samples* covers paired designs. In the edgeR User's Guide, it is Section 3.4.1.
Votes
A: How can I find the location of a gene based on cytogenetic bands (e.g. 7q31.2)?
How can I find the location of a gene based on cytogenetic bands (e.g. 7q31.2)?
A: using duplicateCorrelation with limma+voom for RNA-seq data
A: using duplicateCorrelation with limma+voom for RNA-seq data
Comment: What is the correct use of removeBatchEffect's design parameter
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