Showing : genome • reset
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2
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232
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BLAST-like alignment of a DNAString to a BSgenome?
Alignment Genome
7 months ago Charles Plessy ▴ 170
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2
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274
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readVCF requires the argument "genome". What does it stand for?
Genome readVcf VariantAnnotation
14 months ago naive • 0
0
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0
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342
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Using R to compare whole genome sequences/FASTA files to find percent difference
Genome GWASdata
15 months ago Jocelyn • 0
2
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4
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381
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Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 2.3 years ago by 140 • written 2.3 years ago by • 0
1
vote
1
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372
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Gviz UCSC tracks not visible
Gviz R UCSC Tracks genome locusplot
updated 2.6 years ago by ▴ 730 • written 2.6 years ago by • 0
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352
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Job: Post-doc fellow - Aparicio Lab
single cell bioinformatics genome sequencing Job
2.7 years ago jmaanaki • 0
2
votes
2
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746
views
Filtering GFF3 file
annotation gff3 gff genome
updated 2.7 years ago by 11k • written 2.7 years ago by • 0
6
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4
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1.0k
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the coordinates of exons of RefSeq or ENSEMBL genes
txdb genome exons
updated 2.8 years ago by 25k • written 2.8 years ago by ▴ 640
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0
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351
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Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
3.0 years ago jmaanaki • 0
1
vote
2
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472
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Gallus gallus package genome update release
genome novel package release
updated 3.3 years ago by 59k • written 3.3 years ago by • 0
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2
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481
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Multiple alignment of big DNA sequences files
multiplealignment genome
3.7 years ago Giuseppe ▴ 20
2
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3
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747
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Building a reduced BSgenome.Gallus.UCSC.galGal 4 from Bioconductor
r build genome chicken-sheme
6.6 years ago pertille • 0
12 results • Page 1 of 1
Recent ...
Replies
Comment: CPM after RUVseq by James W. MacDonald 59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq by James W. MacDonald 59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq by Jess • 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error by Laurent Gatto 1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue by shepherl 3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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