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Showing :
genome
•
reset
0
votes
2
replies
232
views
BLAST-like alignment of a DNAString to a BSgenome?
Alignment
Genome
7 months ago
Charles Plessy
▴ 170
0
votes
2
replies
274
views
readVCF requires the argument "genome". What does it stand for?
Genome
readVcf
VariantAnnotation
14 months ago
naive
• 0
0
votes
0
replies
342
views
Using R to compare whole genome sequences/FASTA files to find percent difference
Genome
GWASdata
15 months ago
Jocelyn
• 0
2
votes
4
replies
381
views
Help with Missing Gene from hg38
annotation
genome
hg38
TxDb.Hsapiens.UCSC.hg38.knownGene
BSgenome.Hsapiens.UCSC.hg38
updated 2.3 years ago by
kayla.interdonato
140 • written 2.3 years ago by
jam526
• 0
1
vote
1
reply
372
views
Gviz UCSC tracks not visible
Gviz
R
UCSC Tracks
genome
locusplot
updated 2.6 years ago by
Robert Ivanek
▴ 730 • written 2.6 years ago by
s.koturan
• 0
0
votes
0
replies
352
views
Job:
Post-doc fellow - Aparicio Lab
single cell
bioinformatics
genome
sequencing
Job
2.7 years ago
jmaanaki
• 0
2
votes
2
replies
746
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 2.7 years ago by
Michael Lawrence
11k • written 2.7 years ago by
mictadlo
• 0
6
votes
4
replies
1.0k
views
the coordinates of exons of RefSeq or ENSEMBL genes
txdb
genome
exons
updated 2.8 years ago by
Martin Morgan
25k • written 2.8 years ago by
Bogdan
▴ 640
0
votes
0
replies
351
views
Job:
Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell
genome
cancer
Job
3.0 years ago
jmaanaki
• 0
1
vote
2
replies
472
views
Gallus gallus package genome update release
genome
novel
package
release
updated 3.3 years ago by
James W. MacDonald
59k • written 3.3 years ago by
pertille
• 0
0
votes
2
replies
481
views
Multiple alignment of big DNA sequences files
multiplealignment
genome
3.7 years ago
Giuseppe
▴ 20
2
votes
3
replies
747
views
Building a reduced BSgenome.Gallus.UCSC.galGal 4 from Bioconductor
r
build
genome
chicken-sheme
6.6 years ago
pertille
• 0
12 results • Page
1 of 1
Recent ...
Replies
Comment: CPM after RUVseq
by
James W. MacDonald
59k
Also, you might be confused about something. CPM is counts/million counts, which *uses library size to scale normalize* and logCPM is just…
Comment: CPM after RUVseq
by
James W. MacDonald
59k
You shouldn't use CPM or logCPM for any of the steps! To use `RUVr` you need to fit a preliminary model using `edgeR`, which takes counts a…
Comment: CPM after RUVseq
by
Jess
• 0
Thank you James! It hadn't occurred to me to input CPM rather than logCPM which is why my df$NormalizedCounts didn't exceed 17ish in valu…
Answer: RPX PXDataset error
by
Laurent Gatto
1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue
by
shepherl
3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
Awards
• All
Teacher
to
Gordon Smyth
45k
Teacher
to
Aaron Lun
★ 27k
Scholar
to
James W. MacDonald
59k
Popular Question
to
Lluís Revilla Sancho
▴ 660
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to
Basti
▴ 280
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