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Showing :
genome
•
reset
4
votes
2
replies
204
views
A way to find which genome builds a package supports
build
genome
12 weeks ago • updated 11 weeks ago
Dmitry
• 0
0
votes
1
reply
360
views
bwa mem2 index genome - chipseq analysis
Genome
bwamem
ChIPSeqData
index
updated 3 months ago by
ATpoint
★ 2.9k • written 3 months ago by
Maka
• 0
0
votes
2
replies
597
views
BLAST-like alignment of a DNAString to a BSgenome?
Alignment
Genome
20 months ago • updated 19 months ago
Charles Plessy
▴ 170
0
votes
2
replies
707
views
readVCF requires the argument "genome". What does it stand for?
Genome
readVcf
VariantAnnotation
2.2 years ago
naive
• 0
0
votes
0
replies
759
views
Using R to compare whole genome sequences/FASTA files to find percent difference
Genome
GWASdata
2.3 years ago
Jocelyn
• 0
2
votes
4
replies
641
views
Help with Missing Gene from hg38
annotation
genome
hg38
TxDb.Hsapiens.UCSC.hg38.knownGene
BSgenome.Hsapiens.UCSC.hg38
updated 3.3 years ago by
kayla.interdonato
140 • written 3.3 years ago by
jam526
• 0
1
vote
1
reply
662
views
Gviz UCSC tracks not visible
Gviz
R
UCSC Tracks
genome
locusplot
updated 3.6 years ago by
Robert Ivanek
▴ 730 • written 3.6 years ago by
s.koturan
• 0
0
votes
0
replies
567
views
Job:
Post-doc fellow - Aparicio Lab
single cell
bioinformatics
genome
sequencing
Job
3.7 years ago
jmaanaki
• 0
2
votes
2
replies
1.4k
views
Filtering GFF3 file
annotation
gff3
gff
genome
updated 3.8 years ago by
Michael Lawrence
11k • written 3.8 years ago by
mictadlo
▴ 10
6
votes
4
replies
1.9k
views
the coordinates of exons of RefSeq or ENSEMBL genes
txdb
genome
exons
updated 3.9 years ago by
Martin Morgan
25k • written 3.9 years ago by
Bogdan
▴ 660
0
votes
0
replies
555
views
Job:
Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell
genome
cancer
Job
4.0 years ago
jmaanaki
• 0
1
vote
2
replies
648
views
Gallus gallus package genome update release
genome
novel
package
release
updated 4.3 years ago by
James W. MacDonald
63k • written 4.3 years ago by
pertille
• 0
0
votes
2
replies
733
views
Multiple alignment of big DNA sequences files
multiplealignment
genome
4.7 years ago
Giuseppe
▴ 20
2
votes
3
replies
984
views
Building a reduced BSgenome.Gallus.UCSC.galGal 4 from Bioconductor
r
build
genome
chicken-sheme
7.6 years ago
pertille
• 0
14 results • Page
1 of 1
Recent ...
Replies
Answer: multiple filters in biomaRt
by
RuBBiT0
▴ 10
First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…
Comment: Diffbind "No genome detected"
by
kyliecode
• 0
Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…
Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio)
by
Michael Love
40k
I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…
Comment: TCGAbiolinks cannot find bcr_patient_barcode
by
Habil Zare
▴ 170
I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!
Answer: error in ChAMP loading file
by
jenniferbrowngates
• 0
I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …
Votes
Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
Comment: Error: biomaRt has encountered an unexpected server error.
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
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Tiago C. Silva
▴ 270
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to
reba.duncan
• 0
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to
tntntntntn
▴ 10
Popular Question
to
rodrigo.duarte88
▴ 30
Scholar
to
Rory Stark
★ 4.9k
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