Bioconductor Genome

Showing : genome • reset

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204

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build genome

12 weeks ago • updated 11 weeks ago Dmitry • 0

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360

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Genome bwamem ChIPSeqData index

updated 3 months ago by ATpoint ★ 2.9k • written 3 months ago by Maka • 0

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597

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Alignment Genome

20 months ago • updated 19 months ago Charles Plessy ▴ 170

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707

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Genome readVcf VariantAnnotation

2.2 years ago naive • 0

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759

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Genome GWASdata

2.3 years ago Jocelyn • 0

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641

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annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38

updated 3.3 years ago by kayla.interdonato 140 • written 3.3 years ago by jam526 • 0

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662

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Gviz R UCSC Tracks genome locusplot

updated 3.6 years ago by Robert Ivanek ▴ 730 • written 3.6 years ago by s.koturan • 0

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567

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single cell bioinformatics genome sequencing Job

3.7 years ago jmaanaki • 0

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1.4k

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annotation gff3 gff genome

updated 3.8 years ago by Michael Lawrence 11k • written 3.8 years ago by mictadlo ▴ 10

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1.9k

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txdb genome exons

updated 3.9 years ago by Martin Morgan 25k • written 3.9 years ago by Bogdan ▴ 660

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555

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single cell genome cancer Job

4.0 years ago jmaanaki • 0

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648

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genome novel package release

updated 4.3 years ago by James W. MacDonald 63k • written 4.3 years ago by pertille • 0

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733

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multiplealignment genome

4.7 years ago Giuseppe ▴ 20

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984

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r build genome chicken-sheme

7.6 years ago pertille • 0

14 results • Page 1 of 1

Recent ...

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Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10

First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…

Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k

I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…

Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170

I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!

Answer: error in ChAMP loading file by jenniferbrowngates • 0

I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …

Votes

Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

Comment: Interpret plot from DiffBind

Awards • All

Scholar to Tiago C. Silva ▴ 270