Convert transcriptomic bam to genomic bam?
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@saadmurtazakhan-6782
Last seen 15 days ago
United States

Hi,

I have a transcriptomic bam obtained from aligning nanopore transcriptome sequencing data to the cdna sequence. To visualize gene models etc (in IGV) I need to convert it to genomic coordinates and I was wondering how can I be able to do it using ensembldb?

Is there a way around without realigning the data to genome to get the coordinates using STAR etc?

ensembldb transcriptome genome coordinateconversion • 151 views
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@mikelove
Last seen 19 hours ago
United States

This post does not concern Bioconductor software. Try biostars instead.

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