Bioconductor Transcriptome

Showing : transcriptome • reset

votes

336

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transcriptome splicing assembly

updated 12 months ago by James W. MacDonald 64k • written 12 months ago by Marianna ▴ 10

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replies

489

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transcriptome Annotation mapping

20 months ago Ava • 0

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1.2k

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wgcna coexpression transcriptome

updated 5.8 years ago by Peter Langfelder ★ 2.8k • written 5.8 years ago by jol.espinoz ▴ 40

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1.1k

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wgcna transcriptome big data metagenomics gene expression

5.8 years ago jol.espinoz ▴ 40

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921

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limma microarray transcriptome

updated 7.2 years ago by Gordon Smyth 49k • written 7.2 years ago by ctl • 0

5 results • Page 1 of 1

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Answer: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by Peter Hickey ▴ 650

An example usually helps. Here's a way to do it using base R. ``` library(DropletUtils) # Mocking up some 10X HDF5-formatted data. out <-…

Answer: rDGIdb package inconsistency with web interface by James W. MacDonald 64k

It doesn't appear to be inconsistent. Here is the [API call result][1]. And the [query on the old version][2]. Although as you may be notin…

Comment: Easiest way to convert read10xMolInfo data into a dataframe in R with gene label by Peter Hickey ▴ 650

Initially posted to https://github.com/MarioniLab/DropletUtils/issues/104

Comment: How to read fcs3.2 files by James W. MacDonald 64k

You need to supply more information than saying you tried things and they didn't work. Show code with error messages.

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Looks good then.

Votes

Answer: SingleR annotation of several slots/patients

Answer: List of Deprecated Packages for Bioc3.18

Attempting to import SBML file using R

Answer: RNASeq time course analysis, missing time points for control

Answer: biomaRt not working - lazy table error

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Popular Question to Henrik Bengtsson ★ 2.4k

Popular Question to paul.johnston ▴ 10

Teacher to Mike Smith ★ 6.2k