Bioconductor Transcriptome

Showing : transcriptome • reset

votes

410

views

ensembldb transcriptome genome coordinateconversion

updated 6 months ago by Michael Love 42k • written 6 months ago by saadmurtazakhan ▴ 10

votes

658

views

transcriptome splicing assembly

updated 23 months ago by James W. MacDonald 67k • written 23 months ago by Marianna ▴ 20

votes

replies

741

views

transcriptome Annotation mapping

2.5 years ago Ava • 0

votes

1.6k

views

wgcna coexpression transcriptome

updated 6.7 years ago by Peter Langfelder ★ 3.0k • written 6.7 years ago by jol.espinoz ▴ 40

votes

replies

1.4k

views

wgcna transcriptome big data metagenomics gene expression

6.7 years ago jol.espinoz ▴ 40

votes

1.1k

views

limma microarray transcriptome

updated 8.0 years ago by Gordon Smyth 51k • written 8.0 years ago by ctl • 0

6 results • Page 1 of 1

Recent ...

Replies

Comment: ChAMP - obtaining beta values using EPICv2 annotation by Aurora • 0

Have you solved it? I have the same problem as you

Comment: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable by gabry.scata ▴ 10

Hi James, and thank you so much for your quick reply! That's great to know that I have installed successfully the packages i wanted. What …

Comment: pathview error "negative length vectors are not allowed by Evan • 0

Same for N-glycan metabolism-- fails with `same.layer = TRUE` , smudges and comet-like shading with `same.layer = FALSE`, crowded web with …

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Technically it's fitting an analysis of deviance (ANODEV) test, but the principle is the same - deviance, like the likelihood, measures goo…

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Yeah, it's fine. What `maSigPro` does in this case is to reformulate the data. Your design has columns that are not useful, and `maSigPro` …

Votes

Removing Effect of Covariate in Only a Subset of Samples in a Model Containing All Samples Loses Full Rank if Factor but not Numerical

Comment: How to conduct maSigPro analysis with only one condition?

Comment: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat

Answer: How to conduct maSigPro analysis with only one condition?

Awards • All