Improving the design matrices vignette in RNAseq123
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@lluis-revilla-sancho
Last seen 11 hours ago
European Union

The "guide to creating design matrices for gene expression experiments" of the [RNAseq123 workflow][1] doesn't show some figures.

Figure 3 and figure 13 show the html code to include the figure but not the actual figure.

In addition, There is along line of text formatted as inline code that starts with "Figures (see ?stats::model.matrix' for more). PLOT: Observed data points are drawn".
I think a plot was meant to go there and that there is a missing ` after matrix instead of '.

I couldn't find the original repository to send a PR to fix this.

RNAseq123 • 278 views
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@gordon-smyth
Last seen 1 hour ago
WEHI, Melbourne, Australia

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with special characters in figure legends). The vignette itself is fine. The problem will disappear when the Bioconductor build updates to knitr 1.45.

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Cool. Thanks for looking into it.

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