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RNAseq123
•
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0
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2
replies
162
views
Deseq2 paird analysis in a cohort mixed of paired and unpaired samples
DESeq2
RNAseq123
3 months ago
fatemeh.peimani
• 0
0
votes
3
replies
358
views
DESeq2 Statistic - Padj NA
DESeq2
RNAseq123
rnaseq
deseq2
metatranscriptomic
updated 5 months ago by
Michael Love
40k • written 5 months ago by
irish.prg
• 0
1
vote
6
replies
944
views
KEGG enrichment analysis for non model organism
RNAseq123
5 months ago
afsanarupa1
• 0
2
votes
5
replies
491
views
Can we massively improve RNA-Seq results by slightly reducing the counts in it?
edgeR
RNAseq123
updated 6 months ago by
Gordon Smyth
47k • written 6 months ago by
Istvan Albert
50
0
votes
1
reply
608
views
Confused about understanding the output and statistics of BAM file after STAR aligning
RNAseq123
VariantFiltering
Alignment
VariantAnnotation
updated 7 months ago by
James W. MacDonald
63k • written 7 months ago by
Mohamed
▴ 10
1
vote
1
reply
281
views
Confused about design for RNA seq experiment
RNAseq
ExperimentData
RNAseq123
RNA
ExperimentalDesign
updated 8 months ago by
ATpoint
★ 2.9k • written 8 months ago by
Mohamed
▴ 10
0
votes
0
replies
299
views
Plotting a line plot for genes across 4-species
RNAseq123
10 months ago
Mohamed
▴ 10
2
votes
1
reply
467
views
Error in RNAseq123 analysis, unexpected symbol.
RNAseq123
Rna
updated 11 months ago by
Gordon Smyth
47k • written 11 months ago by
Mikołaj Mierzejewski
• 0
5
votes
6
replies
1.1k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
13 months ago
Alan
• 0
0
votes
1
reply
524
views
python and R
snpeff
python
tophat
r
RNAseq123
updated 22 months ago by
Kevin Blighe
3.8k • written 22 months ago by
kusum
• 0
1
vote
0
replies
801
views
featureCounts running too long
RNAseq123
2.2 years ago
demirkalecy
▴ 10
0
votes
0
replies
342
views
Circular RNA
CircularRNA
RNASeq
RNAseq123
2.3 years ago
rpokhre2
• 0
1
vote
3
replies
2.9k
views
Using TMM normalized counts in Deseq2
RNAseq123
written 2.4 years ago by
mmicky5050
• 0
12
votes
4
replies
3.8k
views
differential expression analysis of htseq data with edgeR/voom
voom
htseq
edgeR
limma
RNASeq123
updated 4.4 years ago by
Gordon Smyth
47k • written 6.0 years ago by
wd
▴ 30
14 results • Page
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Comment: Ensembl plants at annotationHub?
by
Bruno
• 0
Hi Guido, Thanks for your fast reply the error was as said in my question "Annotation must be a GRanges object", when I tried to use the a…
Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 3.6k
You did not show the code that resulted in that error, so we have to guess what you did. Yet, the [R package][1] `Signac` contains the func…
Comment: Query regarding phyloseq object construct with QIIME output
by
betterwound
• 0
Thanks for sharing the code [geometry dash](https://geometrydash.io/)
Answer: Ensembl plants at annotationHub?
by
Bruno
• 0
Hi Johannes, First, thank you so much for providing these annotations for the community. We feel often a bit left off in the plant commu…
Comment: DESeq2 on multilevel design variable
by
swbarnes2
★ 1.2k
Did you relevel before or after calling DESeq?
Votes
Comment: DESeq2 on multilevel design variable
Comment: Ensembl plants at annotationHub?
Answer: DESeq2 on multilevel design variable
Comment: Sudden error with KEGG analysis using gometh
Comment: Sudden error with KEGG analysis using gometh
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