Question

ChAMP not available for bioconductor 3.19

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Macsue • 0

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Last seen 14 days ago

Australia

Does anyone have managed to install ChAMP for R 4.4.0 Bioconductor 3.19? Is there any updates on this?

Bioconductor ChAMP • 363 views

ADD COMMENT • link updated 20 days ago by shepherl 3.9k • written 21 days ago by Macsue • 0

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if (!require("BiocManager", quietly = TRUE))

install.packages("BiocManager") Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4.0 (2024-04-24 ucrt)

BiocManager::install("ChAMP") 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cran.rstudio.com/ Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4.0 (2024-04-24 ucrt) Installing package(s) 'ChAMP'

ADD REPLY • link 21 days ago Macsue • 0

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Warning message:package ChAMP is not available for Bioconductor version 3.19 A version of this package for your version of R might be available elsewhere see the ideas at

ADD REPLY • link 21 days ago Macsue • 0

score 0 · Answer 1 · 2024-05-28

See Problem installing ChAMP on a MacBook . We have reached out to goseq to fix the package; we have a community member volunteering to take over maintenance of the package if the current maintainers are no longer able to. We are waiting for the response. If no response is given we will proceed with granting the volunteer maintainer access to fix the package. I expect it to be available soon.