Question

ChAMP not available for bioconductor 3.19

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Macsue • 0

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Last seen 5 months ago

Australia

Does anyone have managed to install ChAMP for R 4.4.0 Bioconductor 3.19? Is there any updates on this?

Bioconductor ChAMP • 1.1k views

ADD COMMENT • link updated 6 months ago by shepherl 4.1k • written 6 months ago by Macsue • 0

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if (!require("BiocManager", quietly = TRUE))

install.packages("BiocManager") Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4.0 (2024-04-24 ucrt)

BiocManager::install("ChAMP") 'getOption("repos")' replaces Bioconductor standard repositories, see 'help("repositories", package = "BiocManager")' for details. Replacement repositories: CRAN: https://cran.rstudio.com/ Bioconductor version 3.19 (BiocManager 1.30.23), R 4.4.0 (2024-04-24 ucrt) Installing package(s) 'ChAMP'

ADD REPLY • link 6 months ago Macsue • 0

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Warning message:package ChAMP is not available for Bioconductor version 3.19 A version of this package for your version of R might be available elsewhere see the ideas at

ADD REPLY • link 6 months ago Macsue • 0

score 0 · Answer 1 · 2024-05-28

See Problem installing ChAMP on a MacBook . We have reached out to goseq to fix the package; we have a community member volunteering to take over maintenance of the package if the current maintainers are no longer able to. We are waiting for the response. If no response is given we will proceed with granting the volunteer maintainer access to fix the package. I expect it to be available soon.