Fail to install hgu133plus2.db
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Entering edit mode
yu • 0
@acd73e39
Last seen 9 weeks ago
Hong Kong

When I try to install hgu133plus2.db in R studio, it automatically starts to install org.Hs.eg.db.

And then it tells me the error: dependency 'org.Hs.eg.db' is not available for package 'hgu133plus2.db'

I have no idea what to do... Thank you so much for helping me!


if(!requireNamespace("hgu133plus2.db",quietly = T))
  BiocManager::install("hgu133plus2.db")
org.Hs.eg.db hgu133plus2 • 338 views
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Problem solved!

I downloaded the org.Hs.eg.db package from the website, and installed with the following code, then everything worked perfectly.

install.packages(".../Downloads/org.Hs.eg.db_3.19.1.tar.gz", repos = NULL, type = "source")
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@james-w-macdonald-5106
Last seen 1 day ago
United States

FYI, you can just do

BiocManager::install("org.Hs.eg.db")

And you will for sure get the correct version, whereas downloading directly provides no guarantee of that.

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