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hgu133plus2
•
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0
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322
views
Error: package ‘hgu133plus2’
hgu133plus2
updated 10 months ago by
shepherl
3.8k • written 10 months ago by
Allan
• 0
2
votes
1
reply
1.9k
views
topGO expected values showing NA
GO
hgu133plus2
topGO
GO
hgu133plus2
topGO
updated 3.2 years ago by
Doc
▴ 20 • written 11.0 years ago by
Kishor Tappita
▴ 340
5
votes
4
replies
3.1k
views
How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf
affymetrix microarrays
hgu133plus2
affy
6.2 years ago
rahil
▴ 30
1
vote
4
replies
2.1k
views
hgu133plus2cdf cant download
normalization
hgu133plus2
6.5 years ago
marion.ryan
• 0
0
votes
4
replies
4.4k
views
error in sort.int , 'x' must be atomic in affy::boxplot
affy package
boxplot
hgu133plus2
oligo package
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
Javier Pérez Florido
▴ 840
0
votes
4
replies
1.5k
views
about columm "size" in out of hyperGtest ( Gostat package)
GO
hgu133plus2
affy
GO
hgu133plus2
affy
updated 7.1 years ago by
tlaguna
▴ 10 • written 14.8 years ago by
gregory voisin
▴ 430
0
votes
2
replies
1.2k
views
HGU133PLUS.db : NA's when using getSYMBOL while uptodate NetAffx database gives gene names
Annotation
hgu133plus2
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
benoit.tessoulin
• 0
0
votes
2
replies
1.5k
views
Analysing microarray data in BioConductor-The Knowledgeblog
hgu133plus2
getSymbol
error in unlist
microarray
9.0 years ago • updated 7.4 years ago
IOM
▴ 20
0
votes
5
replies
2.2k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a
hgu133b
hgu133plus2
hgu95a
hgu95av2
hu6800
u133x3p
hgu133a
hgu133b
hgu133plus2
updated 8.0 years ago by
alexvpickering
▴ 110 • written 11.9 years ago by
Voke AO
▴ 760
0
votes
2
replies
2.1k
views
How to convert probe sets to Gene symbols ?
affylmgui
affymetrix microarrays
hgu133plus2
updated 8.3 years ago by
b.nota
▴ 360 • written 8.3 years ago by
gtrdy20
• 0
0
votes
3
replies
2.4k
views
HUgene 2.0 analyses with CEL files, oligo package
microarray
annotation
hgu133plus2
hugene20
9.0 years ago
kanacska
▴ 10
0
votes
3
replies
1.9k
views
Affymetrix ReadAffy() can't read my CEL file
microarray
affy
cancer
hgu133plus2
package
updated 9.1 years ago by
James W. MacDonald
65k • written 9.1 years ago by
kanacska
▴ 10
2
votes
2
replies
1.3k
views
problem with custom cdf
microarray
affy
hgu133plus2
annotation
cdf
updated 9.3 years ago by
James W. MacDonald
65k • written 9.3 years ago by
tadoktor
• 0
0
votes
2
replies
2.0k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO
hgu133plus2
cdf
affy
limma
updated 9.5 years ago by
Steve Lianoglou
★ 13k • written 9.5 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
virtualArray package
Annotation
Preprocessing
hgu133plus2
hgug4112a
9.5 years ago
Guest User
★ 13k
0
votes
1
reply
1.5k
views
Problem in K- means clustering
hgu133plus2
graph
hgu133plus2
graph
updated 9.6 years ago by
Sonali Arora
▴ 390 • written 9.6 years ago by
Aditya Saxena
▴ 10
0
votes
0
replies
8.7k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray
Annotation
Preprocessing
hgu133plus2
hgug4112a
virtualArray
Microarray
hgug4112a
9.8 years ago
Guest User
★ 13k
0
votes
5
replies
2.2k
views
genefilter vs limma - many probes filtered
hgu133plus2
limma
hgu133plus2
limma
updated 9.8 years ago by
Gordon Smyth
50k • written 9.8 years ago by
Guest User
★ 13k
0
votes
3
replies
2.1k
views
BiocLite eror
Microarray
hgu133plus2
Microarray
hgu133plus2
updated 10.0 years ago by
Dan Tenenbaum
★ 8.2k • written 10.0 years ago by
Rabia Johnson
▴ 10
0
votes
0
replies
761
views
Problem with geneAnswers, Reactome and some converted affy IDs
hgu133plus2
probe
hgu133plus2
probe
10.0 years ago
Ulrik Stervbo
▴ 30
0
votes
1
reply
14k
views
operations are possible only for numeric, logical or complex types
hgu133plus2
pathview
hgu133plus2
pathview
updated 10.2 years ago by
Luo Weijun
★ 1.6k • written 10.3 years ago by
Guest User
★ 13k
0
votes
1
reply
2.6k
views
annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray
Annotation
hgu133a
hgu133plus2
cdf
Microarray
Annotation
hgu133a
hgu133plus2
updated 10.3 years ago by
cstrato
★ 3.9k • written 10.3 years ago by
Rahmatallah, Yasir
▴ 10
0
votes
1
reply
1.9k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription
Annotation
Normalization
GO
hgu133plus2
affy
PROcess
Category
Transcription
updated 10.3 years ago by
Federico Lasa
▴ 80 • written 10.3 years ago by
María Maqueda González
▴ 20
0
votes
4
replies
3.6k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation
Normalization
hgu133plus2
affy
PROcess
Category
Annotation
Normalization
affy
updated 10.3 years ago by
James W. MacDonald
65k • written 10.3 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
virtualArray: Error at second execution of virtualArrayExpressionSets
hgu133plus2
virtualArray
hgu133plus2
virtualArray
10.3 years ago
Guest User
★ 13k
0
votes
0
replies
1.6k
views
Unable to install hgu133plus2.db
hgu133plus2
hgu133plus2
10.4 years ago
Guest User
★ 13k
0
votes
2
replies
1.3k
views
segfault ReadAffy cause 'memory not mapped'
Cancer
hgu133plus2
affy
PROcess
Cancer
hgu133plus2
affy
PROcess
updated 10.4 years ago by
Ben Bolstad
★ 1.2k • written 10.4 years ago by
Brian D. Peyser PhD
▴ 70
0
votes
0
replies
1.6k
views
QC for HT HGU133A and U133A X3P
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
10.5 years ago
b a
▴ 40
0
votes
0
replies
1.0k
views
QC for HT HGU133A and U133A X3P
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
10.5 years ago
b a
▴ 40
0
votes
2
replies
1.6k
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation
hgu133plus2
probe
Annotation
hgu133plus2
probe
updated 10.6 years ago by
Yuan Hao
▴ 240 • written 10.6 years ago by
Levi Waldron
★ 1.1k
0
votes
1
reply
1.7k
views
nsFilter error in genefilter
GO
hgu133plus2
cdf
GSVA
AnnotationForge
GO
hgu133plus2
cdf
GSVA
AnnotationForge
updated 10.7 years ago by
James W. MacDonald
65k • written 10.7 years ago by
steven wink
▴ 90
0
votes
2
replies
2.0k
views
Question about mget vs. select for annotation package
hgu133plus2
probe
hgu133plus2
probe
updated 10.7 years ago by
Hervé Pagès
16k • written 10.7 years ago by
Christina Chaivorapol
▴ 40
0
votes
2
replies
1.5k
views
inSilicoMerging and Limma
Colon
hgu133a2
hgu133plus2
limma
inSilicoMerging
Colon
hgu133a2
hgu133plus2
limma
10.8 years ago
Ed Siefker
▴ 230
0
votes
0
replies
1.2k
views
Quantiles from virtualArray example without batcheffect removal are all the same
Microarray
BatchEffect
hgu133plus2
hgug4112a
virtualArray
Microarray
BatchEffect
hgug4112a
10.9 years ago
Daniel Emden
▴ 10
0
votes
0
replies
1.2k
views
topGO expected value column showing NA
GO
hgu133plus2
topGO
GO
hgu133plus2
topGO
11.0 years ago
Kishor Tappita
▴ 340
0
votes
2
replies
1.2k
views
Help interpreting many contrasts in one contrast versus many individual contrast matrices
hgu133plus2
hgu133plus2
updated 11.3 years ago by
wang peter
★ 2.0k • written 11.3 years ago by
Gordon Smyth
50k
0
votes
4
replies
2.6k
views
GEOquery loading error
hgu133plus2
GEOquery
BiocInstaller
hgu133plus2
GEOquery
BiocInstaller
updated 11.8 years ago by
Dan Tenenbaum
★ 8.2k • written 11.8 years ago by
Guest User
★ 13k
0
votes
6
replies
1.6k
views
outlier probes detection
hgu133plus2
hgu133plus2
updated 11.9 years ago by
Djork Clevert
▴ 210 • written 11.9 years ago by
Andrea Grilli
▴ 240
0
votes
3
replies
1.4k
views
combining hgu133a and hgu133b
hgu133a
hgu133b
hgu133plus2
hgu133a
hgu133b
hgu133plus2
11.9 years ago
Mayte Suarez-Farinas
▴ 510
0
votes
1
reply
1.2k
views
error with affycomp package
hgu133plus2
affycomp
hgu133plus2
affycomp
updated 11.9 years ago by
James W. MacDonald
65k • written 11.9 years ago by
Andrea Grilli
▴ 240
0
votes
3
replies
1.3k
views
GOstats - internal filtering?
Annotation
GO
hgu133plus2
GOstats
Category
Annotation
GO
hgu133plus2
GOstats
Category
updated 11.9 years ago by
James W. MacDonald
65k • written 11.9 years ago by
Andrew Jaffe
▴ 120
0
votes
2
replies
2.3k
views
Duplicate probes
hgu133plus2
probe
limma
hgu133plus2
probe
limma
updated 12.0 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k • written 12.0 years ago by
Ed Siefker
▴ 230
0
votes
4
replies
1.3k
views
Question about hgu133plus2cdf?
hgu133plus2
cdf
affy
hgu133plus2
cdf
affy
12.0 years ago
Fabrice Tourre
▴ 970
0
votes
1
reply
1.2k
views
FrozenRMA how to
Microarray
Network
hgu133plus2
Biobase
PROcess
KEGGSOAP
beadarray
EBImage
edgeR
frma
updated 12.0 years ago by
Matthew McCall
▴ 830 • written 12.0 years ago by
Alex Sanchez
▴ 20
0
votes
1
reply
951
views
Creating a customized cut flow with the affy/limma packages
GO
hgu133plus2
limma
ASSIGN
GO
hgu133plus2
limma
ASSIGN
updated 12.1 years ago by
James W. MacDonald
65k • written 12.1 years ago by
Guest User
★ 13k
0
votes
1
reply
1.3k
views
refseq to genesymbol with BiomaRt - problem occurs
GO
hgu133plus2
PROcess
convert
biomaRt
GO
hgu133plus2
PROcess
convert
biomaRt
updated 12.1 years ago by
Wolfgang Huber
★ 13k • written 12.1 years ago by
Andrea Grilli
▴ 240
0
votes
0
replies
824
views
Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2
hgu133plus2
hgu133plus2
12.3 years ago
Guest User
★ 13k
0
votes
4
replies
1.6k
views
annotation package ?
Annotation
hgu133plus2
Annotation
hgu133plus2
updated 12.6 years ago by
Marc Carlson
★ 7.2k • written 12.6 years ago by
Jing Huang
▴ 380
0
votes
1
reply
939
views
a question for SPIA package
Annotation
hgu133plus2
Annotation
hgu133plus2
updated 12.6 years ago by
Sean Davis
21k • written 12.6 years ago by
Jing Huang
▴ 380
0
votes
0
replies
1.0k
views
PGSEA and smcPlot
GO
hgu133plus2
PGSEA
GO
hgu133plus2
PGSEA
12.6 years ago
Valerie Obenchain
★ 6.8k
50 results • Page
1 of 1
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• 0
Thank you. I think I found why the order matters. > Although an intercept-free design matrix has been coded using the 0+ notation, the in…
Comment: Unable to annotate ExpressionSet object from hugene11st chip
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• 0
I did as you told, and after running ```eset.annot <- annotateEset(eset, hugene11sttranscriptcluster.db)``` I got the next output: ``` 'se…
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• 0
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Comment: Problem converting msigdb Human symbols to Zebrafish in gmt format
by
Georg
• 0
Thank you for the detailed response. The code worked right away. I appreciate the quick response.
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Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
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