Showing : hgu133plus2 • reset
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topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 9 months ago by • 0 • written 8.6 years ago by ▴ 340
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4
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1.7k
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How to use custom cdf "hgu133plus2hsentrezgcdf"?
customcdf affymetrix microarrays hgu133plus2 affy
3.8 years ago rahil ▴ 30
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4
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1.2k
views
hgu133plus2cdf cant download
normalization hgu133plus2
4.1 years ago marion.ryan • 0
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4
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3.2k
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error in sort.int , 'x' must be atomic in affy::boxplot
affy package boxplot hgu133plus2 oligo package
updated 4.6 years ago by 58k • written 4.6 years ago by ▴ 840
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4
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1.1k
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about columm "size" in out of hyperGtest ( Gostat package)
GO hgu133plus2 affy GO hgu133plus2 affy
updated 4.7 years ago by ▴ 10 • written 12.4 years ago by ▴ 430
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2
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HGU133PLUS.db : NA's when using getSYMBOL while uptodate NetAffx database gives gene names
Annotation hgu133plus2
updated 4.7 years ago by 58k • written 4.7 years ago by • 0
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2
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Analysing microarray data in BioConductor-The Knowledgeblog
hgu133plus2 getSymbol error in unlist microarray
6.6 years ago • updated 5.0 years ago IOM ▴ 20
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5
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1.5k
views
ReadAffy() Error - 2 Platforms in one file
hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hu6800 u133x3p hgu133a hgu133b hgu133plus2
updated 5.6 years ago by ▴ 110 • written 9.5 years ago by ▴ 760
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2
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How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 5.9 years ago by ▴ 340 • written 5.9 years ago by • 0
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3
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1.9k
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HUgene 2.0 analyses with CEL files, oligo package
microarray annotation hgu133plus2 hugene20
6.6 years ago kanacska ▴ 10
0
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3
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1.1k
views
Affymetrix ReadAffy() can't read my CEL file
microarray affy cancer hgu133plus2 package
updated 6.7 years ago by 58k • written 6.7 years ago by ▴ 10
2
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2
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805
views
problem with custom cdf
microarray affy hgu133plus2 annotation cdf
updated 6.9 years ago by 58k • written 6.9 years ago by • 0
0
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2
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1.5k
views
HGU133Plus2 CDF vs hgu133plus2hsentrezgcdf CDF (30% difference in results)
GO hgu133plus2 cdf affy limma
updated 7.1 years ago by 13k • written 7.1 years ago by ★ 12k
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774
views
virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
7.1 years ago Guest User ★ 12k
0
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1
reply
1.1k
views
Problem in K- means clustering
hgu133plus2 graph hgu133plus2 graph
updated 7.2 years ago by ▴ 380 • written 7.2 years ago by ▴ 10
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0
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7.5k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
7.4 years ago Guest User ★ 12k
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5
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1.7k
views
genefilter vs limma - many probes filtered
hgu133plus2 limma hgu133plus2 limma
updated 7.4 years ago by 43k • written 7.4 years ago by ★ 12k
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3
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1.7k
views
BiocLite eror
Microarray hgu133plus2 Microarray hgu133plus2
updated 7.6 years ago by ★ 8.2k • written 7.6 years ago by ▴ 10
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0
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views
Problem with geneAnswers, Reactome and some converted affy IDs
hgu133plus2 probe hgu133plus2 probe
7.6 years ago Ulrik Stervbo ▴ 30
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1
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12k
views
operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 7.8 years ago by ★ 1.5k • written 7.9 years ago by ★ 12k
0
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1
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1.7k
views
annotation package for HuEx-1_0-st-v1 platform instead of pd.huex.1.0.st.v1
Microarray Annotation hgu133a hgu133plus2 cdf Microarray Annotation hgu133a hgu133plus2
updated 7.9 years ago by ★ 3.9k • written 7.9 years ago by ▴ 10
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1
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1.3k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription Annotation Normalization GO hgu133plus2 affy PROcess Category Transcription
updated 7.9 years ago by ▴ 80 • written 7.9 years ago by ▴ 20
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4
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2.8k
views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation Normalization hgu133plus2 affy PROcess Category Annotation Normalization affy
updated 7.9 years ago by 58k • written 7.9 years ago by ★ 12k
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0
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924
views
virtualArray: Error at second execution of virtualArrayExpressionSets
hgu133plus2 virtualArray hgu133plus2 virtualArray
7.9 years ago Guest User ★ 12k
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0
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1.3k
views
Unable to install hgu133plus2.db
hgu133plus2 hgu133plus2
8.0 years ago Guest User ★ 12k
0
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2
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911
views
segfault ReadAffy cause 'memory not mapped'
Cancer hgu133plus2 affy PROcess Cancer hgu133plus2 affy PROcess
updated 8.0 years ago by ★ 1.2k • written 8.0 years ago by ▴ 70
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0
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954
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
8.1 years ago b a ▴ 40
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0
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638
views
QC for HT HGU133A and U133A X3P
hgu133a hgu133plus2 cdf simpleaffy yaqcaffy hgu133a hgu133plus2 cdf simpleaffy yaqcaffy
8.1 years ago b a ▴ 40
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2
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1.1k
views
Fwd: How to handle the case a Affymetrix probe set ID mapped to multiple genes?
Annotation hgu133plus2 probe Annotation hgu133plus2 probe
updated 8.2 years ago by ▴ 240 • written 8.2 years ago by 1.1k
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1
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1.1k
views
nsFilter error in genefilter
GO hgu133plus2 cdf GSVA AnnotationForge GO hgu133plus2 cdf GSVA AnnotationForge
updated 8.3 years ago by 58k • written 8.3 years ago by ▴ 90
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2
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1.5k
views
Question about mget vs. select for annotation package
hgu133plus2 probe hgu133plus2 probe
updated 8.3 years ago by 15k • written 8.3 years ago by ▴ 40
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2
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1.0k
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inSilicoMerging and Limma
Colon hgu133a2 hgu133plus2 limma inSilicoMerging Colon hgu133a2 hgu133plus2 limma
8.4 years ago Ed Siefker ▴ 230
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0
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829
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Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
8.5 years ago Daniel Emden ▴ 10
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0
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topGO expected value column showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
8.6 years ago Kishor Tappita ▴ 340
0
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2
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827
views
Help interpreting many contrasts in one contrast versus many individual contrast matrices
hgu133plus2 hgu133plus2
updated 8.9 years ago by ★ 2.0k • written 8.9 years ago by 43k
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4
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1.5k
views
GEOquery loading error
hgu133plus2 GEOquery BiocInstaller hgu133plus2 GEOquery BiocInstaller
updated 9.4 years ago by ★ 8.2k • written 9.4 years ago by ★ 12k
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6
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921
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outlier probes detection
hgu133plus2 hgu133plus2
updated 9.5 years ago by ▴ 210 • written 9.5 years ago by ▴ 240
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3
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924
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combining hgu133a and hgu133b
hgu133a hgu133b hgu133plus2 hgu133a hgu133b hgu133plus2
9.5 years ago Mayte Suarez-Farinas ▴ 510
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1
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882
views
error with affycomp package
hgu133plus2 affycomp hgu133plus2 affycomp
updated 9.5 years ago by 58k • written 9.5 years ago by ▴ 240
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3
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748
views
GOstats - internal filtering?
Annotation GO hgu133plus2 GOstats Category Annotation GO hgu133plus2 GOstats Category
updated 9.5 years ago by 58k • written 9.5 years ago by ▴ 120
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2
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1.6k
views
Duplicate probes
hgu133plus2 probe limma hgu133plus2 probe limma
updated 9.6 years ago by ★ 1.9k • written 9.6 years ago by ▴ 230
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4
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777
views
Question about hgu133plus2cdf?
hgu133plus2 cdf affy hgu133plus2 cdf affy
9.6 years ago Fabrice Tourre ▴ 970
0
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1
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756
views
FrozenRMA how to
Microarray Network hgu133plus2 Biobase PROcess KEGGSOAP beadarray EBImage edgeR frma
updated 9.6 years ago by ▴ 830 • written 9.6 years ago by ▴ 20
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1
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621
views
Creating a customized cut flow with the affy/limma packages
GO hgu133plus2 limma ASSIGN GO hgu133plus2 limma ASSIGN
updated 9.7 years ago by 58k • written 9.7 years ago by ★ 12k
0
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1
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788
views
refseq to genesymbol with BiomaRt - problem occurs
GO hgu133plus2 PROcess convert biomaRt GO hgu133plus2 PROcess convert biomaRt
updated 9.7 years ago by 13k • written 9.7 years ago by ▴ 240
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522
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Combining 2 different Affychips for analysis e.g. HGU133A and HGU133plus2
hgu133plus2 hgu133plus2
9.9 years ago Guest User ★ 12k
0
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4
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957
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annotation package ?
Annotation hgu133plus2 Annotation hgu133plus2
updated 10.2 years ago by ★ 7.2k • written 10.2 years ago by ▴ 380
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1
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628
views
a question for SPIA package
Annotation hgu133plus2 Annotation hgu133plus2
updated 10.2 years ago by 21k • written 10.2 years ago by ▴ 380
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0
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726
views
PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
10.2 years ago Valerie Obenchain ★ 6.7k
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PGSEA and smcPlot
GO hgu133plus2 PGSEA GO hgu133plus2 PGSEA
10.2 years ago Iain Gallagher ▴ 930
50 results • Page 1 of 1
Recent ...
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Comment: getPromoters by guoyou88 • 0
Thanks for your reply. It's very likely the getPromoter function works as you said. When I perform intersection between ChIPseq peaks and p…
Comment: Installation of RnBeads package fails on Ubuntu 18.04.5 LTS by mscherer ▴ 50
The whole process would look something like this: #Create the environment conda create rnbeads bioconductor-rnbeads conda acti…
Comment: Installation of RnBeads package fails on Ubuntu 18.04.5 LTS by j6163mls • 0
Hi mscherer, Let me, please, I ask you : when you have installed bioconductor-rnbeads with conda, could you write the next steps (code) to…
Comment: getPromoters by Guillaume Devailly ▴ 30
My intuition is that it returns the "TSS" of the genes table (instead of looking at the transcripts table), that is to say the `start` of +…
Comment: RNA-seq with patient samples without replicates with multiple timepoints by Gordon Smyth 43k
No your approaches are not right -- differences between patients can't be ignored when assessing time effects and clustering can't be used …
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Answer: Error arrayQualityMetrics
Comment: Running the DESeq2 "DESeqDataSetFromMatrix" function returns a dimname error
Comment: GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
Answer: scater::plotHeatmap with swap_rownames gives error
Answer: scater::plotHeatmap with swap_rownames gives error
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