Question: the statistical test that DESeq2 use
0
gravatar for elhamdallalbashi
2.6 years ago by
elhamdallalbashi0 wrote:

Hello All,

for estimating the differential expression values,what statistical test does DEseq2 use for estimating the differential expression values,is it t-test, Fisher exact test or some other?

deseq2 statistics • 1.4k views
ADD COMMENTlink modified 2.6 years ago by Ryan C. Thompson7.4k • written 2.6 years ago by elhamdallalbashi0
Answer: the statistical test that DESeq2 use
1
gravatar for Ryan C. Thompson
2.6 years ago by
The Scripps Research Institute, La Jolla, CA
Ryan C. Thompson7.4k wrote:

For the methodological details of DESeq2, you should check Chapter 4 of the manual, "Theory Behind DESeq2". There, you'll find that the default test is the Wald test, with the likelihood ratio test as an alternative option.

ADD COMMENTlink written 2.6 years ago by Ryan C. Thompson7.4k

Thanks for the quick and helpful response

ADD REPLYlink written 2.6 years ago by elhamdallalbashi0
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