for estimating the differential expression values,what statistical test does DEseq2 use for estimating the differential expression values,is it t-test, Fisher exact test or some other?
For the methodological details of DESeq2, you should check Chapter 4 of the manual, "Theory Behind DESeq2". There, you'll find that the default test is the Wald test, with the likelihood ratio test as an alternative option.
Thanks for the quick and helpful response
Login before adding your answer.
Use of this site constitutes acceptance of our User Agreement and Privacy