the statistical test that DESeq2 use
1
0
Entering edit mode
@elhamdallalbashi-11418
Last seen 4.7 years ago

Hello All,

for estimating the differential expression values,what statistical test does DEseq2 use for estimating the differential expression values,is it t-test, Fisher exact test or some other?

deseq2 statistics • 1.8k views
ADD COMMENT
1
Entering edit mode
@ryan-c-thompson-5618
Last seen 12 months ago
Scripps Research, La Jolla, CA

For the methodological details of DESeq2, you should check Chapter 4 of the manual, "Theory Behind DESeq2". There, you'll find that the default test is the Wald test, with the likelihood ratio test as an alternative option.

ADD COMMENT
0
Entering edit mode

Thanks for the quick and helpful response

ADD REPLY

Login before adding your answer.

Traffic: 319 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6