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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
6 weeks ago • updated 7 days ago Luo Weijun ★ 1.5k
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0
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84
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
9 weeks ago m.jackson • 0
1
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4
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230
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P adjusted values in Deseq2
DESeq2 Statistics
3 months ago Jesus • 0
0
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0
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99
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
4 months ago António Miguel de Jesus Domingues ▴ 480
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0
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177
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4 months ago Laura • 0
0
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0
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111
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
5 months ago • updated 6 weeks ago Luo Weijun ★ 1.5k
1
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2
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131
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 7 months ago by 32k • written 7 months ago by ▴ 40
2
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0
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150
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
7 months ago Johannes Rainer ★ 1.9k
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117
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
9 months ago • updated 6 months ago whduke • 0
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0
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1.1k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
2.8 years ago • updated 5 months ago Luo Weijun ★ 1.5k
1
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123
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
11 months ago Fred Hutch (Recruiting) ▴ 40
3
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1.4k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
18 months ago • updated 16 months ago Gordon Smyth 42k
0
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0
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513
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
2.3 years ago • updated 17 months ago Luo Weijun ★ 1.5k
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1
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113
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
18 months ago A • 0
0
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1
reply
171
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 18 months ago by 32k • written 18 months ago by • 0
2
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2
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290
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 19 months ago by 42k • written 19 months ago by ▴ 10
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210
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
20 months ago tatabox • 0
3
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3
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311
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 23 months ago by 32k • written 23 months ago by • 0
0
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1
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267
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
2.3 years ago naglemi ▴ 10
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212
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package for mismatch distribution?
genetics statistics
2.3 years ago myriam.croze07 • 0
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4
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781
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 2.4 years ago by 32k • written 2.4 years ago by • 0
1
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2
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372
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Newbie to all of this
bioconductor statistics
2.6 years ago sportwoo • 0
8
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8
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2.4k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 2.6 years ago by 7.6k • written 2.6 years ago by ▴ 50
1
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2
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331
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 2.7 years ago by 56k • written 2.7 years ago by • 0
1
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4
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457
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
2.7 years ago Andrea Carenzo • 0
0
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2
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378
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comparing two GOstats result lists
gostats statistics
updated 2.9 years ago by 56k • written 2.9 years ago by ▴ 10
1
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0
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465
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
3.0 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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412
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
3.1 years ago floriandeckert ▴ 30
0
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0
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437
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
3.1 years ago kieranrcampbell ▴ 30
0
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0
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440
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Two questions about pathifier package
pathways statistics microarray
3.3 years ago arronar • 0
10
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6
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3.6k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 3.6 years ago by 56k • written 3.6 years ago by ▴ 10
2
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4
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479
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 70
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0
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545
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
3.6 years ago rbronste ▴ 60
0
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0
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804
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Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
4.2 years ago • updated 4.1 years ago Luo Weijun ★ 1.5k
1
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2
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1.2k
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how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 4.2 years ago by • 0 • written 6.2 years ago by ▴ 80
0
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0
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714
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Job: Bioinformaticist, Research Programmer
R genomics statistics Job
4.2 years ago radel • 0
1
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2
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1.7k
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the statistical test that DESeq2 use
deseq2 statistics
updated 4.3 years ago by 7.6k • written 4.3 years ago by • 0
2
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2
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3.6k
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edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
4.4 years ago jol.espinoz ▴ 40
1
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0
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902
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Job: PhD Positions in Computational Cancer Research
computational biology image analysis cancer genomics statistics Job
4.4 years ago Bernd Fischer ▴ 540
0
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0
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623
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Job: Seeking computational biologists with expertise in RNA-Seq and/or statistics at Immuneering Corporation, Cambridge MA and New York NY
rna-seq CNS Neurodegeneration statistics computational biology Job
4.5 years ago mmartin ▴ 20
0
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0
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681
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Job: Postdoc in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA
genetics/genomics omics data statistics development R Job
4.8 years ago • updated 4.6 years ago Luo Weijun ★ 1.5k
0
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0
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1.2k
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
4.7 years ago Wolfgang Huber 13k
0
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0
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1.2k
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Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
5.1 years ago • updated 4.8 years ago clif.duhn • 0
0
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4
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3.2k
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10 multiple comparisons in DESeq2
deseq2 rnaseq statistics
updated 4.9 years ago by 32k • written 4.9 years ago by • 0
2
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3
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792
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RNAseq outlier is a critical sample
rnaseq outlier statistics batch effect
updated 4.9 years ago by 42k • written 4.9 years ago by • 0
2
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1
reply
492
views
limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 4.9 years ago by ★ 26k • written 4.9 years ago by • 0
7
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3
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1.6k
views
Differing topTable() results with Limma with and without specifying coefficient
limma microarray statistics
updated 5.1 years ago by 42k • written 5.1 years ago by • 0
19
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4
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5.3k
views
Confidence intervals on edgeR logFC
edgeR statistics confidence interval
updated 5.1 years ago by • 0 • written 6.6 years ago by ▴ 40
0
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2
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765
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Compute test-score statistical significance using control-scores from shuffled population
statistics hypotheses R
5.1 years ago Bade ▴ 310
0
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0
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1.0k
views
Job: Computational Biologist (Genome Statistical Analyst) position in CRUK Manchester Institute, UK
job bioinformatics ngs genomics statistics Job
5.2 years ago Hui Sun Leong ▴ 10
50 results • Page 1 of 1
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Answer: DiffBind by Rory Stark ★ 3.8k
I'll answer the second question first. You should not accessing the `$binding` matrix directly -- the chromosome names are factor numbers,…
Comment: How to download the ChAMP dependency ChAMPdata by shepherl 2.6k
You could try increasing the timeout limit for downloading files. I increased mine in a `.Rprofile` script so its persistent in all sessio…
Comment: DiffBind reporting error by Rory Stark ★ 3.8k
If you could give me access to your `dbind_de` object, I can have a look at what is going on. it would help to see the sequence of calls yo…
Comment: limma - removing samples? by RMP87 • 0
Thank you very much for the explanation. Making it more precise. Could I analyze and normalize all samples from a dataset even though I had…
Comment: DESeq2, why are the signs of EDASeq offsets flipped compared to CQN ? by Saulius • 0
Yes - I think you are right once more. Thanks for taking so much time to look into this. Size factors come in twice in the code of `cqn`: …
Votes
What does dba.PCA in DiffBind exactly do?
Answer: How to retrieve peak summit from DiffBind peaks
Comment: How to download the ChAMP dependency ChAMPdata
Effect of feature number on adjusted p-values
Effect of feature number on adjusted p-values
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