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3
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5
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489
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P adjusted values in Deseq2
DESeq2 Statistics
written 12 months ago by • 0
0
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0
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106
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
12 weeks ago Wolfgang Huber 13k
0
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0
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274
views
Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
9 months ago • updated 8 months ago Luo Weijun ★ 1.5k
0
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0
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282
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
10 months ago m.jackson • 0
0
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0
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290
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
12 months ago António Miguel de Jesus Domingues ▴ 480
0
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0
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370
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
12 months ago Laura • 0
0
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0
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271
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
13 months ago • updated 9 months ago Luo Weijun ★ 1.5k
1
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2
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252
views
Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 15 months ago by 35k • written 15 months ago by ▴ 40
2
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0
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306
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
16 months ago Johannes Rainer ★ 1.9k
0
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0
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260
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
17 months ago • updated 14 months ago whduke • 0
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0
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
3.5 years ago • updated 13 months ago Luo Weijun ★ 1.5k
1
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266
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
19 months ago Fred Hutch (Recruiting) ▴ 40
3
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1.5k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
2.2 years ago • updated 2.0 years ago Gordon Smyth 44k
0
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828
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
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2.9 years ago • updated 2.1 years ago Luo Weijun ★ 1.5k
0
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1
reply
195
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
2.2 years ago A • 0
0
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1
reply
254
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 2.2 years ago by 35k • written 2.2 years ago by • 0
2
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2
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574
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 2.3 years ago by 44k • written 2.3 years ago by ▴ 10
0
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0
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371
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
2.4 years ago tatabox • 0
3
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3
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464
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 2.6 years ago by 35k • written 2.6 years ago by • 0
0
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1
reply
392
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
2.9 years ago naglemi ▴ 10
0
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0
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305
views
package for mismatch distribution?
genetics statistics
3.0 years ago myriam.croze07 • 0
0
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4
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1.1k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 3.1 years ago by 35k • written 3.1 years ago by • 0
1
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2
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459
views
Newbie to all of this
bioconductor statistics
3.2 years ago sportwoo • 0
8
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8
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3.2k
views
Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 3.3 years ago by 7.7k • written 3.3 years ago by ▴ 50
1
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2
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436
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 3.4 years ago by 58k • written 3.4 years ago by • 0
1
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4
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597
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
3.4 years ago Andrea Carenzo • 0
0
votes
2
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496
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comparing two GOstats result lists
gostats statistics
updated 3.6 years ago by 58k • written 3.6 years ago by ▴ 20
1
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0
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565
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
3.7 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
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525
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
3.8 years ago floriandeckert ▴ 30
0
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0
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542
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
3.8 years ago kieranrcampbell ▴ 50
0
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0
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535
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Two questions about pathifier package
pathways statistics microarray
4.0 years ago arronar • 0
13
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6
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4.8k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 4.3 years ago by 58k • written 4.3 years ago by ▴ 20
2
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4
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581
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 4.3 years ago by 13k • written 4.3 years ago by ▴ 70
0
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0
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653
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
4.3 years ago rbronste ▴ 60
0
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0
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937
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Job: Research Scientist in Biostatistics/Bioinformatics
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4.9 years ago • updated 4.8 years ago Luo Weijun ★ 1.5k
1
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2
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1.4k
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how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 4.9 years ago by • 0 • written 6.9 years ago by ▴ 80
0
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0
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791
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Job: Bioinformaticist, Research Programmer
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4.9 years ago radel • 0
1
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2
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1.9k
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the statistical test that DESeq2 use
deseq2 statistics
updated 4.9 years ago by 7.7k • written 4.9 years ago by • 0
2
votes
2
replies
4.3k
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edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
5.1 years ago jol.espinoz ▴ 40
1
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0
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1.0k
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Job: PhD Positions in Computational Cancer Research
computational biology image analysis cancer genomics statistics Job
5.1 years ago Bernd Fischer ▴ 550
0
votes
0
replies
720
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Job: Seeking computational biologists with expertise in RNA-Seq and/or statistics at Immuneering Corporation, Cambridge MA and New York NY
rna-seq CNS Neurodegeneration statistics computational biology Job
5.2 years ago mmartin ▴ 20
0
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0
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774
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Job: Postdoc in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA
genetics/genomics omics data statistics development R Job
5.5 years ago • updated 5.3 years ago Luo Weijun ★ 1.5k
0
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0
replies
1.3k
views
News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
5.4 years ago Wolfgang Huber 13k
0
votes
0
replies
1.3k
views
Job: Bioinformatics Programmer (Statistician) at University of California at San Francisco
R bioinformatician job Perl Python statistics Job
5.7 years ago • updated 5.5 years ago clif.duhn • 0
0
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4
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3.9k
views
10 multiple comparisons in DESeq2
deseq2 rnaseq statistics
updated 5.6 years ago by 35k • written 5.6 years ago by • 0
2
votes
3
replies
901
views
RNAseq outlier is a critical sample
rnaseq outlier statistics batch effect
updated 5.6 years ago by 44k • written 5.6 years ago by • 0
2
votes
1
reply
590
views
limma for gene expression analysis with big and unbalanced sample size
limma microarray statistics
updated 5.6 years ago by ★ 27k • written 5.6 years ago by • 0
7
votes
3
replies
1.9k
views
Differing topTable() results with Limma with and without specifying coefficient
limma microarray statistics
updated 5.7 years ago by 44k • written 5.7 years ago by • 0
19
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4
replies
5.9k
views
Confidence intervals on edgeR logFC
edgeR statistics confidence interval
updated 5.8 years ago by • 0 • written 7.3 years ago by ▴ 40
0
votes
2
replies
853
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Compute test-score statistical significance using control-scores from shuffled population
statistics hypotheses R
5.8 years ago Bade ▴ 310
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Comment: Cannot install Phyloseq and dada2 by Guido Hooiveld ★ 3.2k
Did you notice this message:? Installation paths not writeable, unable to update packages path: C:/Program Files/R/R-4.0.0/libra…
Comment: Use of shrunken LFCs to address questions about the distribution of LFCs between by i.sudbery ▴ 20
Thanks Mike. I might have a play with stratifying by expression level. One reason I wasn't looking at gene set testing is that its the nul…
Answer: submitting a BSgenome package by deisianyufg • 0
From my Github repository. I am sorry, I thought the package was already released and realize now that is still only in my github reposito…
Comment: PlotPCA in DESeq2 doesn't produce exactly the same result as prcomp by swbarnes2 ▴ 970
Is the one plot a mirror image of the other?
Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between by Michael Love 35k
hi Ian, Great question, and good to be concerned that the mean expression may be a confounder for either analysis, Why not stratify your…
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Answer: Use of shrunken LFCs to address questions about the distribution of LFCs between
Answer: DiffBind dba.count Error in if (sum(tokeep) < length(tokeep))
Comment: submitting a BSgenome package
Answer: rlog vs vst for outlier identification
Answer: DESeq2 median of ratios normalization for signature score calculation
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