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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
24 days ago alena.vanboemmel • 0
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2
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131
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Results analysis of differential gene expression using DESeq2 package
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updated 7 weeks ago by ★ 1.2k • written 7 weeks ago by • 0
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159
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
5 months ago arisarkar88 ▴ 10
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207
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
6 months ago Andy Lynch ▴ 120
1
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211
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
6 months ago Andy Lynch ▴ 120
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468
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
8 months ago nabiyogesh ▴ 10
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3
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760
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 11 months ago by 21k • written 12 months ago by ▴ 10
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856
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P adjusted values in Deseq2
DESeq2 Statistics
written 2.1 years ago by • 0
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407
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
15 months ago • updated 6 days ago Wolfgang Huber 13k
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503
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
22 months ago • updated 21 months ago Luo Weijun ★ 1.6k
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530
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
23 months ago m.jackson • 0
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501
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
2.1 years ago António Miguel de Jesus Domingues ▴ 490
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
2.1 years ago Laura • 0
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483
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
2.2 years ago • updated 22 months ago Luo Weijun ★ 1.6k
1
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485
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 2.3 years ago by 39k • written 2.3 years ago by ▴ 40
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504
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
2.4 years ago Johannes Rainer ★ 2.0k
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Job: Two Bioinformatics Fellowship Positions at US EPA
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2.5 years ago • updated 2.2 years ago whduke • 0
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1.5k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
4.6 years ago • updated 2.2 years ago Luo Weijun ★ 1.6k
1
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
2.7 years ago Fred Hutch (Recruiting) ▴ 40
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
3.2 years ago • updated 3.1 years ago Gordon Smyth 47k
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987
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
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4.0 years ago • updated 3.2 years ago Luo Weijun ★ 1.6k
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
3.2 years ago A • 0
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386
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 3.3 years ago by 39k • written 3.3 years ago by • 0
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1.4k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 3.3 years ago by 47k • written 3.3 years ago by ▴ 10
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Proteomics data analysis with DEP no replicates
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3.5 years ago tatabox • 0
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712
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 3.7 years ago by 39k • written 3.7 years ago by • 0
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
4.0 years ago naglemi ▴ 10
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438
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package for mismatch distribution?
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4.0 years ago myriam.croze07 • 0
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 4.1 years ago by 39k • written 4.1 years ago by • 0
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582
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Newbie to all of this
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4.3 years ago sportwoo • 0
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 4.4 years ago by 7.8k • written 4.4 years ago by ▴ 50
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 4.4 years ago by 62k • written 4.4 years ago by • 0
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
4.5 years ago • updated 4.4 years ago Andrea Carenzo • 0
0
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650
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comparing two GOstats result lists
gostats statistics
updated 4.7 years ago by 62k • written 4.7 years ago by ▴ 20
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733
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
4.8 years ago Fred Hutch (Recruiting) ▴ 40
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693
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DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
4.8 years ago floriandeckert ▴ 30
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700
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
4.9 years ago kieranrcampbell ▴ 50
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662
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Two questions about pathifier package
pathways statistics microarray
5.1 years ago arronar • 0
23
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7.3k
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Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 5.3 years ago by 62k • written 5.3 years ago by ▴ 30
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742
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Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 5.3 years ago by 13k • written 5.3 years ago by ▴ 70
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774
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
5.4 years ago rbronste ▴ 60
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1.1k
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Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
6.0 years ago • updated 5.8 years ago Luo Weijun ★ 1.6k
1
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1.7k
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how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 5.9 years ago by • 0 • written 7.9 years ago by ▴ 80
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910
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Job: Bioinformaticist, Research Programmer
R genomics statistics Job
5.9 years ago radel • 0
1
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2.3k
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the statistical test that DESeq2 use
deseq2 statistics
updated 6.0 years ago by 7.8k • written 6.0 years ago by • 0
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2
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5.8k
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edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
6.2 years ago jol.espinoz ▴ 40
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1.2k
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Job: PhD Positions in Computational Cancer Research
computational biology image analysis cancer genomics statistics Job
6.2 years ago Bernd Fischer ▴ 550
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861
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Job: Seeking computational biologists with expertise in RNA-Seq and/or statistics at Immuneering Corporation, Cambridge MA and New York NY
rna-seq CNS Neurodegeneration statistics computational biology Job
6.3 years ago mmartin ▴ 20
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917
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Job: Postdoc in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA
genetics/genomics omics data statistics development R Job
6.5 years ago • updated 6.4 years ago Luo Weijun ★ 1.6k
0
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1.5k
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News: Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop statistics single-cell News
6.4 years ago Wolfgang Huber 13k
50 results • Page 1 of 1
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Comment: mas5calls function doesn't work; mirna40cdf problem by Guido Hooiveld ★ 3.5k
Also: you could consider using `DABG` for present/absent calls. James elaborated on this in this thread: https://support.bioconductor.org/p…
Comment: mas5calls function doesn't work; mirna40cdf problem by James W. MacDonald 62k
Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.
Comment: mas5calls function doesn't work; mirna40cdf problem by Berna • 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage by ayabalbaa1990 • 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object by shaimaa • 0
I used the combat-seq but the deseq complain as its not integer what should i do
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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