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69
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Job:
PhD position in Bioinformatics in Jena
Statistics
ComputationalBiology
Aging
MachineLearning
24 days ago
alena.vanboemmel
• 0
0
votes
2
replies
131
views
Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize
statistics
DESeq2
updated 7 weeks ago by
swbarnes2
★ 1.2k • written 7 weeks ago by
N
• 0
1
vote
0
replies
159
views
Statistical test for genomic annotation by ChIPseeker
statistics
PeakAnnotation
ChIPseeker
GuangchuangYu
5 months ago
arisarkar88
▴ 10
1
vote
0
replies
207
views
Job:
Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational
teaching
statistics
research
6 months ago
Andy Lynch
▴ 120
1
vote
0
replies
211
views
Job:
Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics
Proteomics
Cancer
Statistics
Bioinformatics
6 months ago
Andy Lynch
▴ 120
0
votes
6
replies
468
views
regression analysis for epic array methylation data using limma
limma
Epigenetics
STATISTICS
R
8 months ago
nabiyogesh
▴ 10
0
votes
3
replies
760
views
Reading large file (15GB) in R
R
Rstudio
Bioconducter
statistics
updated 11 months ago by
Sean Davis
21k • written 12 months ago by
nabiyogesh
▴ 10
3
votes
5
replies
856
views
P adjusted values in Deseq2
DESeq2
Statistics
written 2.1 years ago by
Jesus
• 0
0
votes
2
replies
407
views
News:
Ascona Workshop “Biological systems: from first principles to data-driven modelling and back” 27. 3. - 1. 4. 2022
theory
modeling
statistics
ascona
Workshop
15 months ago • updated 6 days ago
Wolfgang Huber
13k
0
votes
0
replies
503
views
Job:
Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq
pathview
statistics
R
22 months ago • updated 21 months ago
Luo Weijun
★ 1.6k
0
votes
0
replies
530
views
Job:
Bioinformatician at MiroBio, Oxford, UK
Transcriptomics
Bioconductor
Statistics
Job
Biocon
23 months ago
m.jackson
• 0
0
votes
0
replies
501
views
Job:
Scientist/Senior Scientist, Statistical Geneticist
Sequencing
Genetics
GeneticsPed
statistics
2.1 years ago
António Miguel de Jesus Domingues
▴ 490
0
votes
0
replies
627
views
Job:
Proteomics Bioinformatician
JobPosting
Proteomics
Statistics
Job
2.1 years ago
Laura
• 0
0
votes
0
replies
483
views
Job:
Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R
statistics
pathview
singlecellRNA-Seq
2.2 years ago • updated 22 months ago
Luo Weijun
★ 1.6k
1
vote
2
replies
485
views
Re-calculation of Padj (P adjusted value)
statistics
Benjamini–Hochberg procedure
deseq2
updated 2.3 years ago by
Michael Love
39k • written 2.3 years ago by
Matan G.
▴ 40
2
votes
0
replies
504
views
Job:
Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology
statistics
bioinformatics
Job
2.4 years ago
Johannes Rainer
★ 2.0k
0
votes
0
replies
412
views
Job:
Two Bioinformatics Fellowship Positions at US EPA
bioinformatics
toxicology
Job
sequenicng
statistics
2.5 years ago • updated 2.2 years ago
whduke
• 0
0
votes
0
replies
1.5k
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
genomics
NGS
R
genetics
statistics
4.6 years ago • updated 2.2 years ago
Luo Weijun
★ 1.6k
1
vote
0
replies
464
views
Job:
Post-Doctoral Research Fellow, Cancer Genomics
genomics
seattle
bioinformatics
data science
statistics
Job
2.7 years ago
Fred Hutch (Recruiting)
▴ 40
3
votes
0
replies
1.8k
views
Job:
Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job
proteomics
Job
statistics
3.2 years ago • updated 3.1 years ago
Gordon Smyth
47k
0
votes
0
replies
987
views
Job:
Postdoc and PhD student in Bioinformatics/Biostatistics
NGS
R
statistics
genomics
big data
Job
4.0 years ago • updated 3.2 years ago
Luo Weijun
★ 1.6k
0
votes
1
reply
326
views
How to handle batch effect and interaction with experimental variables
deseq2
statistics
differential expression
3.2 years ago
A
• 0
0
votes
1
reply
386
views
Exclude interaction terms from the design
deseq2
statistics
modelling
updated 3.3 years ago by
Michael Love
39k • written 3.3 years ago by
polyptwo
• 0
2
votes
2
replies
1.4k
views
How adjusted p-values are calculated in limma
limma
r
transcriptomics
FDR
statistics
updated 3.3 years ago by
Gordon Smyth
47k • written 3.3 years ago by
Wuschel
▴ 10
0
votes
0
replies
569
views
Proteomics data analysis with DEP no replicates
DEP
Proteomics
Statistics
limma
3.5 years ago
tatabox
• 0
3
votes
3
replies
712
views
Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2
apeglm
statistics
updated 3.7 years ago by
Michael Love
39k • written 3.7 years ago by
zefrieira
• 0
0
votes
1
reply
578
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS
GWAS
resampling
resample
statistics
4.0 years ago
naglemi
▴ 10
0
votes
0
replies
438
views
package for mismatch distribution?
genetics
statistics
4.0 years ago
myriam.croze07
• 0
0
votes
4
replies
1.6k
views
DESeq2 unbalanced sample size
deseq2
bioconductor
bioinformatics
statistics
updated 4.1 years ago by
Michael Love
39k • written 4.1 years ago by
casikecola
• 0
1
vote
2
replies
582
views
Newbie to all of this
bioconductor
statistics
4.3 years ago
sportwoo
• 0
8
votes
8
replies
4.4k
views
Voom transformation from counts and normalization to negative values
rnaseq
voom
limma
tcga
statistics
updated 4.4 years ago by
Ryan C. Thompson
7.8k • written 4.4 years ago by
Beginner
▴ 50
1
vote
2
replies
580
views
What to do with microarray probes that catch multiple genes?
affymetrix microarrays
microarray
probe
statistics
updated 4.4 years ago by
James W. MacDonald
62k • written 4.4 years ago by
ravelarvargas
• 0
1
vote
4
replies
786
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
4.5 years ago • updated 4.4 years ago
Andrea Carenzo
• 0
0
votes
2
replies
650
views
comparing two GOstats result lists
gostats
statistics
updated 4.7 years ago by
James W. MacDonald
62k • written 4.7 years ago by
sven.schenk
▴ 20
1
vote
0
replies
733
views
Job:
Statistical Research Associate
biostatistics
statistics
sas
git
assay
Job
4.8 years ago
Fred Hutch (Recruiting)
▴ 40
0
votes
0
replies
693
views
DSS DMLTest Prior Estimate of theta dispersion
DSS
dmltest
bayesian
statistics
methylation
4.8 years ago
floriandeckert
▴ 30
0
votes
0
replies
700
views
News:
SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell
cancer genomics
statistics
News
4.9 years ago
kieranrcampbell
▴ 50
0
votes
0
replies
662
views
Two questions about pathifier package
pathways
statistics
microarray
5.1 years ago
arronar
• 0
23
votes
6
replies
7.3k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2
rnaseq
statistics
updated 5.3 years ago by
James W. MacDonald
62k • written 5.3 years ago by
Russ Fraser
▴ 30
2
votes
4
replies
742
views
Removing batch effect on edgeR when interactons are looked at
rnaseq
edger
statistics
model matrix
updated 5.3 years ago by
Steve Lianoglou
13k • written 5.3 years ago by
David R
▴ 70
0
votes
0
replies
774
views
Assigning stats to differential peak locations relative to TSS
chipseeker
chipseq
statistics
5.4 years ago
rbronste
▴ 60
0
votes
0
replies
1.1k
views
Job:
Research Scientist in Biostatistics/Bioinformatics
statistics
genetics
genomics
R
Job
6.0 years ago • updated 5.8 years ago
Luo Weijun
★ 1.6k
1
vote
2
replies
1.7k
views
how to perform pre ranked GSEA in R?
r
microarray
statistics
GSEA
updated 5.9 years ago by
predeus
• 0 • written 7.9 years ago by
Nemo
▴ 80
0
votes
0
replies
910
views
Job:
Bioinformaticist, Research Programmer
R
genomics
statistics
Job
5.9 years ago
radel
• 0
1
vote
2
replies
2.3k
views
the statistical test that DESeq2 use
deseq2
statistics
updated 6.0 years ago by
Ryan C. Thompson
7.8k • written 6.0 years ago by
elhamdallalbashi
• 0
2
votes
2
replies
5.8k
views
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR
bioconductor
fdr
statistics
differential gene expression
6.2 years ago
jol.espinoz
▴ 40
1
vote
0
replies
1.2k
views
Job:
PhD Positions in Computational Cancer Research
computational biology
image analysis
cancer genomics
statistics
Job
6.2 years ago
Bernd Fischer
▴ 550
0
votes
0
replies
861
views
Job:
Seeking computational biologists with expertise in RNA-Seq and/or statistics at Immuneering Corporation, Cambridge MA and New York NY
rna-seq
CNS
Neurodegeneration
statistics
computational biology
Job
6.3 years ago
mmartin
▴ 20
0
votes
0
replies
917
views
Job:
Postdoc in Biostatistics/Bioinformatics at UNC Charlotte, NC, USA
genetics/genomics
omics data
statistics
development
R
Job
6.5 years ago • updated 6.4 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.5k
views
News:
Workshop on Statistical Challenges in Single-Cell Biology, April 30 to May 5, 2017, at Villa Monte Verita, Ascona
workshop
statistics
single-cell
News
6.4 years ago
Wolfgang Huber
13k
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Comment: mas5calls function doesn't work; mirna40cdf problem
by
Guido Hooiveld
★ 3.5k
Also: you could consider using `DABG` for present/absent calls. James elaborated on this in this thread: https://support.bioconductor.org/p…
Comment: mas5calls function doesn't work; mirna40cdf problem
by
James W. MacDonald
62k
Yes. Follow the recommendation in the link that was provided to you by Lori Shepherd.
Comment: mas5calls function doesn't work; mirna40cdf problem
by
Berna
• 0
Thank you for the information. I did not know that. Would you have a tip how I could proceed differently?
Comment: Correct use of Likelihood Ratio Test and LFC Shrinkage
by
ayabalbaa1990
• 0
Hi Michael, So I use this res_LRT <- results(dds_lrt) r2=lfcShrink(dds_lrt, coef=7, res=res_LRT) tu run lfcshrink with LRT, is that oko?…
Comment: Combat and dds Object
by
shaimaa
• 0
I used the combat-seq but the deseq complain as its not integer what should i do
Votes
Answer: mas5calls function doesn't work; mirna40cdf problem
Issue with bumphunter and TxDb.Hsapiens.UCSC.hg38.knownGene that could be due to S4Vectors or an installation problem
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
Strand information in a GAlignmentsList object derived from strand-specific paired-end RNA-seq data
A: How to translate FASTA file of DNA sequence to protein sequence using Biostrings
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