I have issues with the getIndices() function from the flowWorkspace package. It identifies much more cells as "TRUE" for a gate than it should. Here's my code:
wspath<-"~/Desktop/workspc.wsp" ws<-openWorkspace(wspath) G <- parseWorkspace(ws,name=1) nodelist<-getNodes(G[]) num_f5<-grep(pattern = paste("/F5$"),nodelist) f5<-nodelist[num_f5] summary(getIndices(G[],f5))
I have no clue why getIndices() doesn't identify the right cells in the gate I'm interested in, it works perfectly for the gates on top of the gate "F5" in my gating strategy.
Thanks in advance,