Regarding ChIPpeakAnno installation error
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Entering edit mode
Neu.S ▴ 10
@neus-12207
Last seen 2.0 years ago

Hi,

I am getting the following error when trying to install ChIPpeakAnno. Please help to resolve.

The downloaded binary packages are in
        C:\Users\RNAi & FGLab\AppData\Local\Temp\RtmpSY3Oc3\downloaded_packages
Warning messages:
1: running command '"C:/PROGRA~1/R/R-33~1.1/bin/x64/R" CMD INSTALL -l "C:\Program Files\R\R-3.3.1\library" C:\Users\RNAI&F~1\AppData\Local\Temp\RtmpSY3Oc3/downloaded_packages/GO.db_3.3.0.tar.gz' had status 1
2: In install.packages(pkgs = doing, lib = lib, ...) :
  installation of package ‘GO.db’ had non-zero exit status

> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 14393)

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252    LC_MONETARY=English_United States.1252 LC_NUMERIC=C                           LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.22.3

loaded via a namespace (and not attached):
[1] tools_3.3.1

Thank you

chippeakanno • 627 views
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Entering edit mode
@martin-morgan-1513
Last seen 10 weeks ago
United States

The problem is almost certainly caused by a bug in R involving quoting of the file path -- either the spaces or ampersand & are causing R to fail. Use a library path (see ?.libPaths() or ?R_LIBS_USER) that does not contain spaces or special characters.

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