lumiR error Error in gregexpr("\t", dataLine1)[[1]] : subscript out of bounds
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hkarakurt ▴ 20
@hkarakurt-12988
Last seen 2.4 years ago
Turkey

Hello,

I am new at Biocondurctor and trying to read, normalize and analyze a expression data from Illumina platform.

I have raw data (non-normalized) as text format and I want to read it with lumiR() command but when I try, I have this error:

Error in gregexpr("\t", dataLine1)[[1]] : subscript out of bounds

When I specify seperator as "\t", I have this error:

Error in strsplit(info[nMetaDataLines + 2], sep)[[1]] : 
  subscript out of bounds

 

I uploaded my data:

https://drive.google.com/open?id=0B_JS-1GnYihbRUJmTUVWWXNINUE

 

How can I read this data with lumiR() and normalize it?

Also, some datas are stored as seperated text files for each sample. How can I combine them? 

 

This is my first post and I really need help,

Thank you

lumi illumina normalization beadarray • 2.7k views
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