Question: Parallel reading of Vcfs using VcfStack/RangedVcfStack
1
gravatar for m.van_iterson
2.3 years ago by
Netherlands
m.van_iterson20 wrote:

I really appreciate the latest addition to GenomicFiles VcfStack for handling a collection of vcfs, very convenient!

However, I could not find any documentation to extract information from the vcfstack in parallel, i.e. using the assay-method. By looking at the source code I noticed this function is using the Map-function, a wrapper around mapply. So could this be replaced by bpmapply to extract the information in parallel?

Regards,

Maarten
 

biocparallel genomicfiles • 423 views
ADD COMMENTlink modified 2.2 years ago by shepherl ♦♦ 1.5k • written 2.3 years ago by m.van_iterson20
Answer: Parallel reading of Vcfs using VcfStack/RangedVcfStack
1
gravatar for shepherl
2.3 years ago by
shepherl ♦♦ 1.5k
United States
shepherl ♦♦ 1.5k wrote:

Thank you very much for your interest.  We think this is a good suggestion and will look at implementing sometime during the next month. 

ADD COMMENTlink written 2.3 years ago by shepherl ♦♦ 1.5k

Thanks that would be really nice!

ADD REPLYlink written 2.3 years ago by m.van_iterson20
Answer: Parallel reading of Vcfs using VcfStack/RangedVcfStack
1
gravatar for shepherl
2.2 years ago by
shepherl ♦♦ 1.5k
United States
shepherl ♦♦ 1.5k wrote:

Sorry for the delay.  We have made updates and this should be implemented in the devel version of GenomicFiles >= 1.13.9

ADD COMMENTlink written 2.2 years ago by shepherl ♦♦ 1.5k
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