Bioconductor GenomicFiles

Showing : GenomicFiles • reset

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GenomicFiles

updated 8 weeks ago by Hervé Pagès 16k • written 9 weeks ago by user_bioinfo • 0

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721

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GenomicInteractions Basic4Cseq DNASeq GenomicFiles

3.2 years ago koushik • 0

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1.4k

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GenomicFiles ShortRead Rsamtools

3.6 years ago robmaz77 ▴ 20

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855

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GenomicFiles

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by Qiang ▴ 80

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genomicfiles

updated 6.7 years ago by Martin Morgan 25k • written 6.7 years ago by Qiang ▴ 80

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1.2k

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genomicfiles reduceByRange

updated 7.1 years ago by Valerie Obenchain ★ 6.8k • written 7.1 years ago by maltethodberg ▴ 180

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GenomicFiles BiocParallel

updated 7.2 years ago by shepherl 4.0k • written 7.3 years ago by m.van_iterson ▴ 20

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1.4k

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rsamtools genomicalignments genomicfiles

updated 8.2 years ago by Hervé Pagès 16k • written 8.2 years ago by jfiksel ▴ 30

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1.6k

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genomicfiles rsamtools

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by victoriaccorey ▴ 10

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2.7k

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rsamtools genomicalignments genomicfiles

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by Welliton de Souza ▴ 70

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1.1k

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GO Biostrings rtracklayer GenomicRanges BiocParallel GenomicFiles

10.0 years ago Dan Tenenbaum ★ 8.2k

11 results • Page 1 of 1

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Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used by s.malik • 0

thanks, will give it a try

Answer: Harmonizing RNA-seq data of different sourceS(cell vs. tissue) to further conduc by James W. MacDonald 67k

Your question is off-topic for this site. You might try over on biostars.org instead.

Answer: Student by deeenes ▴ 60

An alternative is to use [`OmnipathR::translate_ids`][1] (developed by me): ``` library(OmnipathR) library(magrittr) metabolites <- data.…

Comment: Inconsistent result in edgeR by hiroko.ohmiya • 0

Thank you so much! I understand the result after calculating CPMs.

Answer: Inconsistent result in edgeR by Yunshun Chen ▴ 870

You don't compare gene expression by raw counts. Use something like CPM (count-per-million) at least.

Votes

Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used

Answer: unable to access Annotationhub latest record

How to keep cells square in heatplot function of enrichplot

Answer: Inconsistent result in edgeR

A: MBDseq analysis using qsea package

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