Question

How to extract DEG using limma at threshold value p<0.05 and fold change >1.5 ?

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rkp • 0

@rkp-10175

Last seen 6.9 years ago

How to extract top DEG using limma at threshold value p<0.05 and fold change >1.5 ?

I request you all too kindly suggest the R script for topTable.

topTable(fit2, coef=2, ……?????????)

Thanking you.

limma microarray R bioconductor • 946 views

ADD COMMENT • link updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by rkp • 0

score 0 · Answer 1 · 2017-06-14

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Aaron Lun ★ 28k

@alun

Last seen 7 hours ago

The city by the bay

Read the documentation in ?topTable.

ADD COMMENT • link 7.5 years ago Aaron Lun ★ 28k