Question: Failed to install 'DOSE' package. Win10, 'single candle'
0
gravatar for Yisong Zhen
2.4 years ago by
Yisong Zhen200
Yisong Zhen200 wrote:
source("https://bioconductor.org/biocLite.R")
biocLite("DOSE")
library(DOSE)

Error: package or namespace load failed for DOSE?in readRDS(nsInfoFilePath): unknown input format ## This is the error message.

I tried the debuger protocols, here and here:

But not succeeded in installing it after using the tips above:

(1) I restarted system

(2) I deleted library 'DOSE' in the corresponding folder

(3) I removed and updated the biocInstaller

(4) I remove the .Rhisotry and .Rdata

Any suggestions? Thanks in advance.

PS.

> sessionInfo()
R version 3.4.1 (2017-06-30)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows >= 8 x64 (build 9200)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.26.0

loaded via a namespace (and not attached):
[1] compiler_3.4.1 tools_3.4.1   
ADD COMMENTlink modified 2.4 years ago • written 2.4 years ago by Yisong Zhen200

Maybe edit your question to include the full transcript of the biocLite("DOSE") command. Also, make sure that DOSE is removed from all paths returned by .libPaths().

ADD REPLYlink written 2.4 years ago by Martin Morgan ♦♦ 24k
Answer: Failed to install 'DOSE' package. Win10, 'single candle'
0
gravatar for Yisong Zhen
2.4 years ago by
Yisong Zhen200
Yisong Zhen200 wrote:

@Martin. Thanks. This problem has been sovled.

I down-versioned the base R for Window. 'DOSE' installation in the R 3.3.3  also failed. And installation in R 3.3.2 was OK and I got the 'DOSE' package installed.

ADD COMMENTlink written 2.4 years ago by Yisong Zhen200

Provide the full output of biocLite("DOSE") on your computer; it is available on all platforms and should install.

ADD REPLYlink modified 2.4 years ago • written 2.4 years ago by Martin Morgan ♦♦ 24k
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