Plot per-base-coverage output of a bed file of whole genome
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sgupt46 • 0
@sgupt46-13716
Last seen 17 days ago
Canada

Hi,

 I have a bed file which I converted to genomic ranges and ran coverage function to get the coverage of per base. How to visualize the per-base-coverage? Per-base-coverage visualization would be tough due to the huge size. Is there any function which plot coverage for each 10kB intervals?

Thanks!

coverage bed • 976 views
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@james-w-macdonald-5106
Last seen 14 hours ago
United States

You could use either Gviz or ggbio to do that. Gviz in particular has a comprehensive user's guide you could read.

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