Question: Plot per-base-coverage output of a bed file of whole genome
gravatar for sgupt46
11 months ago by
sgupt460 wrote:


 I have a bed file which I converted to genomic ranges and ran coverage function to get the coverage of per base. How to visualize the per-base-coverage? Per-base-coverage visualization would be tough due to the huge size. Is there any function which plot coverage for each 10kB intervals?


ADD COMMENTlink modified 11 months ago by James W. MacDonald46k • written 11 months ago by sgupt460
gravatar for James W. MacDonald
11 months ago by
United States
James W. MacDonald46k wrote:

You could use either Gviz or ggbio to do that. Gviz in particular has a comprehensive user's guide you could read.

ADD COMMENTlink written 11 months ago by James W. MacDonald46k
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