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Question: Plot per-base-coverage output of a bed file of whole genome
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gravatar for sgupt46
4 months ago by
sgupt460
sgupt460 wrote:

Hi,

 I have a bed file which I converted to genomic ranges and ran coverage function to get the coverage of per base. How to visualize the per-base-coverage? Per-base-coverage visualization would be tough due to the huge size. Is there any function which plot coverage for each 10kB intervals?

Thanks!

ADD COMMENTlink modified 4 months ago by James W. MacDonald45k • written 4 months ago by sgupt460
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gravatar for James W. MacDonald
4 months ago by
United States
James W. MacDonald45k wrote:

You could use either Gviz or ggbio to do that. Gviz in particular has a comprehensive user's guide you could read.

ADD COMMENTlink written 4 months ago by James W. MacDonald45k
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