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readTranscriptFeatures R genomation bed

updated 4 months ago by James W. MacDonald 63k • written 4 months ago by sat • 0

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bed bigBed rtracklayer ucsc

6 months ago L ▴ 50

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rtracklayer R bed

updated 4 months ago by Walters • 0 • written 10 months ago by L ▴ 50

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mappability bed python

updated 16 months ago by James W. MacDonald 63k • written 16 months ago by the • 0

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rtracklayer bed

updated 2.3 years ago by merv ▴ 60 • written 7.2 years ago by Ryan C. Thompson 7.8k

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rtracklayer bed genomicranges

updated 4.6 years ago by Michael Lawrence 11k • written 4.6 years ago by foehn ▴ 80

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4.7 years ago maltethodberg ▴ 160

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bed vcf

updated 4.9 years ago by GENOMIC_region • 0 • written 4.9 years ago by Bogdan ▴ 660

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granges bed genomicranges genomeintervals deseq2

5.4 years ago rbronste ▴ 60

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rtracklayer bed software error

updated 5.7 years ago by Michael Lawrence 11k • written 5.7 years ago by Ryan C. Thompson 7.8k

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coverage bed

updated 5.8 years ago by James W. MacDonald 63k • written 5.8 years ago by sgupt46 • 0

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annotationhub bugs encode bed

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rtracklayer import bed

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gviz BED Ucsc UcscTrack

7.4 years ago Andy91 ▴ 60

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rtracklayer NA BED getseq

7.6 years ago Dimitris Polychronopoulos ▴ 80

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readvcf plink file conversion bed bioc-devel

8.2 years ago mjsduncan • 0

16 results • Page 1 of 1

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Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10

First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…

Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k

I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…

Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170

I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!

Answer: error in ChAMP loading file by jenniferbrowngates • 0

I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …

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Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

Comment: Interpret plot from DiffBind

Awards • All

Scholar to Tiago C. Silva ▴ 270