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Barah
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@barah-4598
Last seen 7.2 years ago
I have tried to download GEO dataset GSE16146 using GEOquery library. It is a two channel printed array containing 83 samples. My aim is to extract the expression matrix for the 83 samples. The following error occurs-
> library('GEOquery')
>gseGSE16146 <- getGEO('GSE16146', GSEMatrix=TRUE)
https://ftp.ncbi.nlm.nih.gov/geo/series/GSE16nnn/GSE16146/matrix/
Error in function (type, msg, asError = TRUE) : Failed to connect to ftp.ncbi.nlm.nih.gov port 443: Timed out
Can anyone help?
There are sometimes intermittent connection problems to GEO. Could you try again a few hours after your last try?