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GSE
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reset
2
votes
3
replies
1.8k
views
Filtering the probe set ids from GSE file
geoquery
GSE
5.9 years ago
mahm
▴ 20
3
votes
11
replies
2.6k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression
geoquery
GSE
bioconductor
microarray
updated 5.9 years ago by
Sean Davis
21k • written 5.9 years ago by
mahm
▴ 20
0
votes
1
reply
1.4k
views
Analysing microarray raw data: GSEXXXX_non-normalized.txt
lumi
microarray
GSE
updated 6.5 years ago by
Gordon Smyth
51k • written 6.5 years ago by
mkd12
• 0
2
votes
2
replies
1.4k
views
how to obtain differentially expressed genes from a GSE serie
microarray
GSE
6.7 years ago
Salvo88
▴ 20
1
vote
2
replies
1.4k
views
Subsetting GSE data with information from two different slots
GSE
subsetting
microarray
updated 6.7 years ago by
Axel Klenk
★ 1.0k • written 6.7 years ago by
A
▴ 40
0
votes
1
reply
1.5k
views
GEOquery download error
geoquery error message
GEOquery
GSE
GEO
6.9 years ago
Barah
▴ 20
0
votes
3
replies
1.6k
views
GEOquery problems while trying to process GSE soft files
GSE
soft files
GEO data
8.8 years ago
sz
• 0
1
vote
1
reply
1.2k
views
Compare Row.names and ID from GSE datasets
geoquery
GSE
identical
row.names
updated 9.8 years ago by
Sean Davis
21k • written 9.8 years ago by
PyPer
▴ 20
8 results • Page
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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