problem in installing Bio conductor package
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k200987 • 0
@k200987-24178
Last seen 7 days ago
United States

hi i am trying to install bioconductor packages in R but its giving me this error

BiocManager :: install() Error in loadNamespace(name) : there is no package called ‘BiocManager’ I am using windows 7 (32bit)

kindly help.

TIA

bioconductorpackages Install • 6.7k views
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Kevin Blighe ★ 3.9k
@kevin
Last seen 28 days ago
Republic of Ireland

Hi,

You need to first install BiocManager. Please try:

install.packages('BiocManager')

Kevin

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Or if it is installed, it needs to be loaded first.

library(BiocManager)
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install.packages('BiocManager') Warning in install.packages : cannot open compressed file 'C:\Users\hp\AppData\Local\Temp\Rtmp8uC60G/repos_https%3A%2F%2Fcran.rstudio.com%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in install.packages : cannot open compressed file 'C:\Users\hp\AppData\Local\Temp\Rtmp8uC60G\file36b43b50503f', probable reason 'No such file or directory' Warning in install.packages : unable to access index for repository https://cran.rstudio.com/src/contrib: cannot open the connection Installing package into 'C:/Users/hp/AppData/Local/R/win-library/4.3' (as 'lib' is unspecified) Warning in install.packages : cannot open compressed file 'C:\Users\hp\AppData\Local\Temp\Rtmp8uC60G/repos_https%3A%2F%2Fcran.rstudio.com%2Fsrc%2Fcontrib.rds', probable reason 'No such file or directory' Warning in install.packages : cannot open compressed file 'C:\Users\hp\AppData\Local\Temp\Rtmp8uC60G\file36b46c711e4e', probable reason 'No such file or directory' Warning in install.packages : unable to access index for repository https://cran.rstudio.com/src/contrib: cannot open the connection Warning in install.packages : package 'BiocManager' is not available for this version of R

A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-patched/R-admin.html#Installing-packages Warning in install.packages : cannot open compressed file 'C:\Users\hp\AppData\Local\Temp\Rtmp8uC60G/repos_https%3A%2F%2Fcran.rstudio.com%2Fbin%2Fwindows%2Fcontrib%2F4.3.rds', probable reason 'No such file or directory' Warning in install.packages : cannot open compressed file 'C:\Users\hp\AppData\Local\Temp\Rtmp8uC60G\file36b46f0e1cb6', probable reason 'No such file or directory' Warning in install.packages : unable to access index for repository https://cran.rstudio.com/bin/windows/contrib/4.3: cannot open the connection

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