Course: Proteomics Using R/Bioconductor

ONLINE, 15-17 March 2021

Instructor: Dr. Laurent Gatto (de Duve Institute, UCLouvain, Belgium)

Course website: https://www.physalia-courses.org/courses-workshops/course58/

This course will introduce participants to the analysis and exploration of mass spectrometry (MS) based proteomics data using R and Bioconductor. The course will cover all levels of MS data, from raw data to identification and quantitation data, up to the statistical interpretation of a typical shotgun MS experiment and will focus on hands-on tutorials. At the end of this course, the participants will be able to manipulate MS data in R and use existing packages for their exploratory and statistical proteomics data analysis.

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Monday

During the first day, we will focus on raw MS data, including how mass spectrometry works, how raw MS data looks like, MS data formats, and how to extract, manipulate and visualise raw data.

Tuesday

The second day will focus in identification data, how to combine them with raw data, quantitation of MS data, and introduce data structure of quantitative proteomics data

Wednesday

The last day will focus on quantitative proteomics, including data structures, data processing, visualisation statistical analysis to identify differentially expression proteins between two groups.

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For the full list of our courses and Workshops, please see: https://www.physalia-courses.org/courses-workshops/