Showing : ProteomicsWorkflow • reset
5
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Using Limma R package For Proteomics differential expression
limma ProteomicsWorkflow
updated 12 days ago by 48k • written 23 months ago by ▴ 330
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151
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R for Mass Spectrometry: Precursor Scan Number lost when converting .wiff to .mzML?
Proteomics RforProteomics ProteomicsWorkflow Spectra MassSpectrometryData
updated 8 weeks ago by 1.6k • written 8 weeks ago by • 0
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5
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R for Mass Spectrometry: PSMatch package won't read .mzid file exported from ProteinPilot?
RforProteomics Proteomics ProteomicsWorkflow
updated 7 weeks ago by 1.6k • written 8 weeks ago by • 0
0
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2
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321
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Proteomics data with NA values
Proteomics ProteoMM ProteomicsWorkflow
updated 8 weeks ago by • 0 • written 3 months ago by • 0
0
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1
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561
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Which software can work withThermo ProteomeDiscover software output?
ProteomicsWorkflow proteomics proteinProfiles
updated 6 months ago by 1.6k • written 2.8 years ago by ▴ 20
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3
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Design and contrast matrices for analyzing the effect of two factors of interest on protein expression, controlling for factors and covariates not of…
limma Proteomics ProteomicsWorkflow
updated 13 months ago by 48k • written 13 months ago by • 0
1
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2
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Questions about msqrob2: raw vs LFQ intensities, model design with blocking
msqrob2 ProteomicsWorkflow proteomics
updated 15 months ago by 48k • written 16 months ago by • 0
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1
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554
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How to pull-down gene/protein names from the database search, using R ?
proteinProfiles ProteomicsWorkflow ProteomicsAnnotationHubData Proteomics
updated 2.1 years ago by 48k • written 2.1 years ago by • 0
2
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1
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2.5k
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Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 2.6 years ago by 63k • written 2.6 years ago by ★ 1.5k
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0
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1.2k
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News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
2.8 years ago info ▴ 10
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1
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858
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R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 2.8 years ago by ★ 1.3k • written 2.8 years ago by ▴ 20
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Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…
Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10
There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…
Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k
No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…
Answer: ''Model_Matrix'' error by Gordon Smyth 48k
This is actually an error message from base R rather than from limma. The error says that `Group` contains 0 or 1 levels, so your assumptio…
Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k
> I don't know the details but do you mean using HDF5RealizationSink or TENxRealizationSink will make it possible to writing sparse multi-d…
Votes
Steps needed to change design (relevel factors) in DESeq2
Steps needed to change design (relevel factors) in DESeq2
Answer: DMRcate design
Answer: DMRcate design
Comment: DMRcate design
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