Showing: annotationforge • reset
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topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topgo annotationforge written 9 months ago by psutton • 0
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go_bp table in custom OrgDb package
annotation go annotationforge pcaexplorer written 9 months ago by psutton • 0 • updated 9 months ago by James W. MacDonald ♦ 52k
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Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
annotationforge written 15 months ago by sbbinfo90 • 0 • updated 15 months ago by James W. MacDonald ♦ 52k
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makeOrgPackageFromNCBI - cannot connect to BioMart
annotationforge written 16 months ago by lukeholman • 0 • updated 16 months ago by James W. MacDonald ♦ 52k
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Running GO analysis via Prostar
proteomics annotationforge rforproteomics prostar written 18 months ago by lolli.langan • 20 • updated 18 months ago by Samuel Wieczorek • 0
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Queries around makeOrgPackageFromNCBI
annotationforge software error R written 19 months ago by laural710 • 0 • updated 19 months ago by Guido Hooiveld • 2.5k
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AnnotationForge, RNAseq, and non-model organism
rnaseq annotationforge nonmodel written 24 months ago by mlpimsler • 0 • updated 24 months ago by James W. MacDonald ♦ 52k
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custom annotation for GO enrichment
annotation go clusterprofiler annotationforge gsea written 2.3 years ago by cabezasdelafuented • 10
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Error during makeOrgPackageFromNCBI
annotationforge makeorgpackagefromncbi written 2.4 years ago by gabciamm • 0
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AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge makeorgpackage written 2.5 years ago by marisa.e.miller • 0
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makeOrgPackage in AnnotationForge "GID" problem
annotationforge written 2.7 years ago by samanthapizi • 0 • updated 2.7 years ago by James W. MacDonald ♦ 52k
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create custom 'System Biology' annotation package - class not found
annotationdbi annotationforge annotationdb written 2.8 years ago by Laure Cougnaud • 20
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RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
microarray annotation annotate annotationforge written 2.8 years ago by MOD • 0
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Easy way to turn OrgDb object from AnnotationHub into package?
annotationdbi annotationforge pathview annotationhub written 2.9 years ago by Jenny Drnevich • 1.9k • updated 2.9 years ago by Valerie Obenchain • 6.7k
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problem with makeOrgPackageFromNCBI when making an annotation package
annotationforge R bioconductor written 3.4 years ago by wssdandan2009 • 0 • updated 2.9 years ago by theobroma22 • 10
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error while making database using Annotationforge package
annotationforge error database written 3.4 years ago by kritikamish99 • 10 • updated 3.4 years ago by Guido Hooiveld • 2.5k
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sqliteSendQuery error in AnnotationForge bioconductor package
annotation annotationdbi annotationforge R bioconductor written 4.8 years ago by Stephen H • 0 • updated 3.4 years ago by Axel Klenk • 940
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AnnotationForge failed due to "Parameter 0 does not have length 1"
annotationforge written 3.9 years ago by zhilongjia • 0 • updated 3.9 years ago by Valerie Obenchain • 6.7k
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errors for makeOrgPackageFromNCBI in AnnotationForge
annotationforge written 4.0 years ago by songeric1107 • 0 • updated 4.0 years ago by Hervé Pagès ♦♦ 14k
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Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation annotationforge written 4.1 years ago by chiapello.m • 0 • updated 4.1 years ago by Martin Morgan ♦♦ 24k
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makeOrgPackage: possible to add option to allow GO terms now in GO.db?
go annotationforge makeorgpackage written 4.5 years ago by Keith Hughitt • 120
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Error during makeOrgPackageFromNCBI
annotation annotationdbi annotationforge makeorgpackagefromncbi written 4.9 years ago by oliver.tills • 0
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IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge written 5.2 years ago by Simon Anders • 3.6k • updated 5.2 years ago by Marc Carlson • 7.2k
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AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb annotationdbi annotationforge written 5.2 years ago by artur • 70 • updated 5.2 years ago by Marc Carlson • 7.2k
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Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
go goprofiles annotationforge bimap written 5.2 years ago by artur • 70
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