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1
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1
answer
119
views
1
answer
Error:object 'lookup_tax_id_by_organism' not found with makeOrgPackageFromNCBI
annotationforge written 3 months ago by sbbinfo90 • 0 • updated 3 months ago by James W. MacDonald ♦ 48k
1
vote
1
answer
170
views
1
answer
makeOrgPackageFromNCBI - cannot connect to BioMart
annotationforge written 4 months ago by lukeholman • 0 • updated 4 months ago by James W. MacDonald ♦ 48k
1
vote
1
answer
159
views
1
answer
Running GO analysis via Prostar
proteomics annotationforge rforproteomics prostar written 6 months ago by lolli.langan • 20 • updated 6 months ago by Samuel Wieczorek • 0
2
votes
1
answer
156
views
1
answer
Queries around makeOrgPackageFromNCBI
annotationforge software error R written 7 months ago by laural710 • 0 • updated 7 months ago by Guido Hooiveld • 2.3k
0
votes
1
answer
283
views
1
answer
AnnotationForge, RNAseq, and non-model organism
rnaseq annotationforge nonmodel written 12 months ago by mlpimsler • 0 • updated 12 months ago by James W. MacDonald ♦ 48k
2
votes
0
answers
747
views
0
answers
custom annotation for GO enrichment
annotation go clusterprofiler annotationforge gsea written 16 months ago by cabezasdelafuented • 10
0
votes
1
answer
350
views
1
answer
Error during makeOrgPackageFromNCBI
annotationforge makeorgpackagefromncbi written 17 months ago by gabciamm • 0
0
votes
0
answers
669
views
0
answers
AnnotationForge makeOrgPackage rsqlite_send_query error
annotationforge makeorgpackage written 17 months ago by marisa.e.miller • 0
3
votes
1
answer
634
views
1
answer
makeOrgPackage in AnnotationForge "GID" problem
annotationforge written 20 months ago by samanthapizi • 0 • updated 20 months ago by James W. MacDonald ♦ 48k
0
votes
0
answers
408
views
0
answers
create custom 'System Biology' annotation package - class not found
annotationdbi annotationforge annotationdb written 22 months ago by Laure Cougnaud • 20
3
votes
2
answers
1.0k
views
2
answers
RSQLite::dbGetPreparedQuery() is deprecated in AnnotationForge
microarray annotation annotate annotationforge written 22 months ago by MOD • 0
0
votes
2
answers
899
views
2
answers
Easy way to turn OrgDb object from AnnotationHub into package?
annotationdbi annotationforge pathview annotationhub written 22 months ago by Jenny Drnevich • 1.9k • updated 22 months ago by Valerie Obenchain ♦♦ 6.7k
1
vote
5
answers
1.0k
views
5 follow
5
answers
problem with makeOrgPackageFromNCBI when making an annotation package
annotationforge R bioconductor written 2.4 years ago by wssdandan2009 • 0 • updated 23 months ago by theobroma22 • 10
0
votes
1
answer
349
views
1
answer
error while making database using Annotationforge package
annotationforge error database written 2.4 years ago by kritikamish99 • 10 • updated 2.4 years ago by Guido Hooiveld • 2.3k
5
votes
3
answers
3.2k
views
5 follow
3
answers
sqliteSendQuery error in AnnotationForge bioconductor package
annotation annotationdbi annotationforge R bioconductor written 3.8 years ago by Stephen H • 0 • updated 2.4 years ago by Axel Klenk • 920
0
votes
1
answer
775
views
1
answer
AnnotationForge failed due to "Parameter 0 does not have length 1"
annotationforge written 2.9 years ago by zhilongjia • 0 • updated 2.9 years ago by Valerie Obenchain ♦♦ 6.7k
0
votes
0
answers
392
views
0
answers
errors for makeOrgPackageFromNCBI in AnnotationForge
annotationforge written 3.0 years ago by songeric1107 • 0 • updated 3.0 years ago by Hervé Pagès ♦♦ 13k
0
votes
1
answer
564
views
1
answer
Error in makeOrgPackageFromNCBI for Medicago truncatula
annotation annotationforge written 3.1 years ago by chiapello.m • 0 • updated 3.1 years ago by Martin Morgan ♦♦ 22k
0
votes
2
answers
481
views
2
answers
makeOrgPackage: possible to add option to allow GO terms now in GO.db?
go annotationforge makeorgpackage written 3.5 years ago by Keith Hughitt • 120
0
votes
4
answers
1.0k
views
4
answers
Error during makeOrgPackageFromNCBI
annotation annotationdbi annotationforge makeorgpackagefromncbi written 3.9 years ago by oliver.tills • 0
0
votes
3
answers
1.3k
views
3
answers
IlluminaHumanMethylation450k.db has undeclared dependency on AnnotationForge
annotationforge written 4.2 years ago by Simon Anders • 3.5k • updated 4.2 years ago by Marc Carlson • 7.2k
1
vote
1
answer
901
views
1
answer
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb annotationdbi annotationforge written 4.2 years ago by artur • 70 • updated 4.2 years ago by Marc Carlson • 7.2k
3
votes
0
answers
1.2k
views
5 follow
0
answers
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
go goprofiles annotationforge bimap written 4.2 years ago by artur • 70
2
votes
1
answer
4.3k
views
1
answer
error: "'names' attribute [16] must be the same length as the vector [2]", using Making Organism packages use of makeOrgPackage()
annotation go annotationforge written 4.2 years ago by artur • 70 • updated 4.2 years ago by Marc Carlson • 7.2k
0
votes
0
answers
510
views
0
answers
Failure to Install Organism Package from AnnotationForge
organism annotationdbi annotationforge written 4.8 years ago by Guest User • 12k
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