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Created An Answer That Has Been Accepted
Awarded 4952 times (see all awards). Earned by the
following contributors:
1 day, 15 hours ago
United States
Answer: Math expression in shapeCustom legend in EnhancedVolcano
1 day, 21 hours ago
United States
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
2 days, 21 hours ago
United States
Answer: How to retrieve gene ontology GO class from gene list?
3 days, 9 hours ago
United States
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
4 days, 18 hours ago
United States
Answer: DESeq2 - dispersion estimation when there is none
6 days, 12 hours ago
WEHI, Melbourne, Australia
Answer: Why p value inconsistent when using different number of pathway score?
6 days, 19 hours ago
Germany
Answer: Why p value inconsistent when using different number of pathway score?
1 week, 1 day ago
WEHI, Melbourne, Australia
Answer: FilterByExpr low counts with small sample size
1 week, 4 days ago
WEHI, Melbourne, Australia
Answer: Reading huge bismark coverage files using bbseq::read.bismark
2 weeks ago
Switzerland
Answer: ComplexHeatmap: change the names of a HeatmapAnnotation object
2 weeks, 1 day ago
WEHI, Melbourne, Australia
Answer: Light difference when using coef vs omit a group when compare 3 groups.
2 weeks, 1 day ago
WEHI, Melbourne, Australia
Answer: Memory errors using read.bismark?
2 weeks, 3 days ago
United States
Answer: Not fully paired differential gene expression analysis
3 weeks, 1 day ago
The city by the bay
Answer: Bluster and Varieties of Louvain Clulstering
3 weeks, 2 days ago
WEHI, Melbourne, Australia
Answer: limma models out of memory issue on Slurm HPC
3 weeks, 3 days ago
United States
Answer: DESeq2 , filter and theta arguments in resutlts()
4 weeks ago
WEHI, Melbourne, Australia
Answer: Differing results from plotMDS and PCAtools
4 weeks ago
WEHI, Melbourne, Australia
Answer: The difference when using Limma compare between 3 conditions vs 2 conditions
1 month ago
Germany
Answer: Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Compari
1 month, 1 week ago
WEHI, Melbourne, Australia
Answer: edgeR, 3 x 2 design with a batch effect and contrasts
1 month, 1 week ago
United States
Answer: Problem converting msigdb Human symbols to Zebrafish in gmt format
1 month, 1 week ago
United States
Answer: padj-based gradient scale from barplot (clusterProfiler results) does not work p
1 month, 1 week ago
United States
Answer: With DESeq2 "Not full rank" Error with design
1 month, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Question about extracting co-efficients for pairwise comparisons in edgeR
1 month, 2 weeks ago
Seattle, WA, United States
Answer: Biostrings: read*StringSet() functions leave open file handles
1 month, 2 weeks ago
Germany
Answer: Creating data matrix in Deseq2 from tximport data invalid class SummarizedExperi
1 month, 3 weeks ago
WEHI, Melbourne, Australia
Answer: Constrast for Time Course Experiments using Limma
1 month, 3 weeks ago
United Kingdom
Answer: Dispersion estimation step is very slow with latest DESeq2 and glmGamPoi
1 month, 3 weeks ago
United States
Answer: Estimating Cell Counts for EPIC V2 array data
1 month, 3 weeks ago
United States
Answer: clusterProfiler, AnnotationHub, and discrepancies in GO Terms
2 months ago
United States
Answer: RLE plots before and after RUVg correction are the same
2 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Confusion about LFC using contrasts weights in EdgeR
2 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Normalization factors when there is a possible unidirectional expression
2 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: How does one test for interactions in EdgeR?
2 months, 2 weeks ago
Denver, University of Colorado Anschutz…
Answer: seqlevelsStyle() not working
2 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Design matrix after RUVg correction
2 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Longitudinal analysis in Limma
2 months, 2 weeks ago
United States
Answer: ComplexHeatmap crashing R session
2 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: How to get normalized values for methylation counts in edgeR
2 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Limma design for 3 replicated time courses comparing treatment vs placebo
2 months, 3 weeks ago
WEHI, Melbourne, Australia
Answer: voom with quality weights after RUV correction
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