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Created An Answer That Has Been Accepted
Awarded 4988 times (see all awards). Earned by the
following contributors:
1 day, 11 hours ago
United States
Answer: A question occur when using DESeq2 on a complex design
5 days, 11 hours ago
United States
Answer: Doubt about model in paired samples (intercept ?)
1 week ago
United States
Answer: DeSeq2 Model Problems with species, tissue, and tissue status nesting
1 week, 1 day ago
United States
Answer: DESeq fitNbinomGLMs Warning Issue: In fitNbinomGLMs(objectNZ[fitidx, , drop = FA
1 week, 1 day ago
United States
Answer: Limma comparing gene expression between base line and one treatment
1 week, 3 days ago
WEHI, Melbourne, Australia
Answer: LIMMA 2x2 Factorial Design with Paired Samples
1 week, 4 days ago
United States
Answer: findOverlaps(), queryHits and subjectHits()
2 weeks, 4 days ago
Germany
Answer: Inconsistent nullp and goseq enrichment results across operating systems
1 month ago
WEHI, Melbourne, Australia
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
1 month, 1 week ago
United States
Answer: Create multiple DoparParams with different number of registered cores
1 month, 1 week ago
United States
Answer: DESeq2 returns results for group with just one replicate
1 month, 2 weeks ago
Australia
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
1 month, 2 weeks ago
Australia
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
1 month, 2 weeks ago
United States
Answer: Double normalising when using sva and deseq2
1 month, 2 weeks ago
Barcelona/Universitat Pompeu Fabra
Answer: Interpretation of GSVA with absRanking=TRUE
1 month, 4 weeks ago
United States
Answer: LRT, pairwise comparisons and p-value adjustment
2 months ago
United States
Answer: Slightly different count plots from R and spreadsheet
2 months, 1 week ago
USA, Los Angeles, USC
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
2 months, 1 week ago
WEHI, Melbourne, Australia
Answer: How to correctly adjust for gender in edgeR
2 months, 3 weeks ago
Barcelona/Universitat Pompeu Fabra
Answer: Method to find pathways different between 2 groups
2 months, 3 weeks ago
United States
Answer: Help with error using camera() in limma
2 months, 4 weeks ago
St Louis, MO
Answer: Perform gene set enrichment analysis using fgsea on two conditions that don't ha
3 months ago
United States
Answer: Math expression in shapeCustom legend in EnhancedVolcano
3 months ago
United States
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
3 months ago
United States
Answer: How to retrieve gene ontology GO class from gene list?
3 months ago
United States
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
3 months ago
United States
Answer: DESeq2 - dispersion estimation when there is none
3 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Why p value inconsistent when using different number of pathway score?
3 months, 1 week ago
Germany
Answer: Why p value inconsistent when using different number of pathway score?
3 months, 1 week ago
EMBL Heidelberg
Answer: Error retrieving ensembl gene id using biomaRt...
3 months, 1 week ago
WEHI, Melbourne, Australia
Answer: FilterByExpr low counts with small sample size
3 months, 1 week ago
WEHI, Melbourne, Australia
Answer: Reading huge bismark coverage files using bbseq::read.bismark
3 months, 2 weeks ago
Switzerland
Answer: ComplexHeatmap: change the names of a HeatmapAnnotation object
3 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Light difference when using coef vs omit a group when compare 3 groups.
3 months, 2 weeks ago
WEHI, Melbourne, Australia
Answer: Memory errors using read.bismark?
3 months, 2 weeks ago
Cambridge, UK
Answer: [Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Bla
3 months, 2 weeks ago
United States
Answer: Not fully paired differential gene expression analysis
3 months, 3 weeks ago
The city by the bay
Answer: Bluster and Varieties of Louvain Clulstering
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