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Answer: orgDB
by
shepherl
4.1k
You can check the AnnotationHub to see if there are any existing. Otherwise you can check out the AnnotationForge package for creating your…
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
by
ATpoint
★ 4.7k
Please go through the current vignette to learn about the syntax and functions. There were quite drastic changes recently, so older code wi…
Answer: DiffBind edgeR normalization --- why are the normalization factors all equal to
by
ATpoint
★ 4.7k
You perform library normalization which is expected to return normalization factors being all 1. If you want to use the more elaborate edge…
Comment: Use of limma R package with targeted proteomics for DE analysis
by
Gordon Smyth
52k
I don't know what the "quantified value" is in your output so I can't advise you on it. It is not part of Olink output that I have seen. Ol…
Comment: Group-specific condition effects with individuals nested: matrix is not full ra
by
picasa1983
• 0
Thanks, I have a doubt about something: If `GroupX.ConditionKO` is KO vs WT in group X, does it mean: 1) `GroupY.ConditionKO` is KO vs W…
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Answer: Group-specific condition effects with individuals nested: matrix is not full ra
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
C: Vertical line at A=0, nothing else, on MA plot
Answer: SingleCellExperiment convenience function for metadata+expression?
Answer: SingleCellExperiment convenience function for metadata+expression?
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