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2 weeks, 5 days ago
United States
Answer: Applying DESeq2 to (suspected) Poisson distributed gene expression data (in the
4 weeks ago
Seattle, WA, United States
Answer: S4Vectors masking utils::findMatches is returning warnings in R 4.3 / Bioconduct
2 months, 1 week ago
Germany
Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar
3 months ago
United States
Answer: how to extract and match information of two filein R
3 months, 4 weeks ago
United States
Answer: TPP2D - multicore computing for bootstrapNullAlternativeModel(...)
5 months, 1 week ago
United States
Answer: Find ranges that are shared by 80% or more of 10 GRanges objects
5 months, 3 weeks ago
St Petersburg
Answer: Implementation of the "original" GSEA algorithm in R
6 months, 1 week ago
United States
Answer: Too many differentially expressed miRNA with limma
7 months, 1 week ago
United States
Answer: Problem obtaining NCBI gene IDs from Ensembl version 107
8 months ago
United States
Answer: karyoploteR genome coverage plotting using BSgenome.TAIR10
10 months ago
United States
Answer: Convert an R data.frame to a bed file in R
10 months, 1 week ago
Australia/Melbourne/Olivia Newton-John …
Answer: cellCounts() function floating point error
10 months, 1 week ago
France
Answer: DESeq2 is renaming gene names and lack of downregulated genes
11 months, 2 weeks ago
United States
Answer: Large difference between lfcshrink and non-shrunk DESeq2 results
1 year ago
United States
Answer: how to color specific node or gene symbol from cnetplot ?
1 year, 1 month ago
United States
Answer: Normalization of IDAT files from Illumina HumanMethylation450 BeadChip without .
1 year, 1 month ago
Miami, US
Answer: GDCprepare of RNAseq counts produces error
1 year, 2 months ago
WEHI, Melbourne, Australia
Answer: GSEA many significant gene sets despite no differentially expressed genes
1 year, 2 months ago
United States
Answer: Why does BSgenome contain more chromosomes of human and mouse species then they
1 year, 2 months ago
United States
Answer: GO term gene ontology enrichment analysis
1 year, 3 months ago
United States
Answer: Replicating iDEP parameters in DESeq2; two conditions and an interaction term.
1 year, 3 months ago
United States
Answer: Updating org.Sc.sgd.db, and integration with topGO
1 year, 3 months ago
United States
Answer: Limma/voom analysis of time-series data (with only 1 condition)
1 year, 4 months ago
United States
Answer: Start to End RNA-Seq with R Bioconductor
1 year, 4 months ago
Seattle, WA, United States
Answer: Why is "SimpleList" not inheriting "list" ?
1 year, 5 months ago
United States
Answer: P-values change 100-fold with only a single count changed
1 year, 5 months ago
Seattle, WA, United States
Answer: Splitting a TxDB or GRanges by Chromosome
1 year, 5 months ago
EMBL Heidelberg
Answer: Install package without updating dependent package
1 year, 6 months ago
Seattle, WA, United States
Answer: Please allow integers in `numeric` format in `seqlengths`
1 year, 6 months ago
Austria
Answer: XVector installation fails because zlib.h is not found
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