2
votes
1
answer
79
views
1
answer
0
votes
0
answers
39
views
0
answers
1
vote
1
answer
174
views
1
answer
EDASeq, RUVSeq and edgeR together
edger edaseq ruvseq written 11 weeks ago by zoppoli pietro10 • updated 11 weeks ago by davide risso790
1
vote
1
answer
106
views
1
answer
Mean-Variance Plot for Normalised Counts
edaseq meanvarplot written 5 months ago by Dario Strbenac1.4k • updated 5 months ago by davide risso790
0
votes
0
answers
93
views
0
answers
2
votes
2
answers
280
views
2
answers
0
votes
1
answer
228
views
1
answer
Incorporating 'offset' into edgeR pipeline
edger edaseq offset written 11 months ago by alakatos80 • updated 11 months ago by Aaron Lun21k
2
votes
1
answer
437
views
1
answer
6
votes
2
answers
498
views
2
answers
1
vote
1
answer
358
views
1
answer
Outputting batch-effect free normalized counts
edaseq ruvseq svaseq written 13 months ago by llo0 • updated 13 months ago by davide risso790
1
vote
1
answer
500
views
1
answer
2
votes
1
answer
1.0k
views
1
answer
How is the mean-variance plot calculated?
edaseq written 2.6 years ago by neverstop0 • updated 2.6 years ago by Wolfgang Huber13k
9
votes
2
answers
1.2k
views
2
answers
How to use normalized values by EDASeq in edgeR?
edger edaseq written 3.3 years ago by rahilsethi0 • updated 3.3 years ago by Gordon Smyth35k
0
votes
1
answer
884
views
1
answer
False positives due to GC content correction - DESeq2
edaseq deseq2 written 4.4 years ago by Guest User12k • updated 4.4 years ago by Michael Love20k
2
votes
1
answer
1.1k
views
1
answer
DESeq2 : Using Normalised ReadCount matrix from EDAseq in DESeq2
normalization edaseq deseq2 written 4.5 years ago by Guest User12k • updated 4.5 years ago by Michael Love20k
0
votes
1
answer
1.1k
views
1
answer
EDASeq within normalization
normalization edaseq written 5.2 years ago by Catarina Almeida30 • updated 5.2 years ago by davide risso790
0
votes
1
answer
540
views
1
answer
problem with aveLogCPM.default in edgeR
edger edaseq written 5.6 years ago by suzy.stiegelmeyer@syngenta.com40 • updated 5.6 years ago by Gordon Smyth35k
0
votes
1
answer
933
views
1
answer
0
votes
1
answer
1.3k
views
1
answer
Large logCPM values when using offsets in edgeR for normalization
sequencing edger cqn edaseq written 5.7 years ago by Ying W90 • updated 5.7 years ago by Gordon Smyth35k
0
votes
1
answer
630
views
1
answer
using offsets from EDASeq and cqn for edgeR
cqn edaseq written 5.8 years ago by Gordon Smyth35k • updated 5.8 years ago by Kasper Daniel Hansen6.4k
0
votes
1
answer
762
views
1
answer
using offsets from EDASeq and cqn
go edger cqn edaseq written 5.8 years ago by love150
0
votes
2
answers
624
views
2
answers
problem in reading bam files with EDASeq
rsamtools edaseq assign written 6.9 years ago by rcaloger500 • updated 6.9 years ago by davide risso790
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