Showing: edaseqreset
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Request for offset slot in DESeqDataSet objects
edaseq deseq2 written 4 months ago by jeroen.gilis0 • updated 4 months ago by Michael Love26k
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163
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231
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How to remove samples from EDAseq SeqExpressionSeq
edaseq written 11 months ago by Jon Bråte160 • updated 11 months ago by davide risso830
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300
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260
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EDASeq, RUVSeq and edgeR together
edger edaseq ruvseq written 14 months ago by zoppoli pietro10 • updated 14 months ago by davide risso830
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232
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Mean-Variance Plot for Normalised Counts
edaseq meanvarplot written 18 months ago by Dario Strbenac1.5k • updated 18 months ago by davide risso830
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384
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Incorporating 'offset' into edgeR pipeline
edger edaseq offset written 23 months ago by alakatos110 • updated 23 months ago by Aaron Lun25k
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6
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Outputting batch-effect free normalized counts
edaseq ruvseq svaseq written 2.1 years ago by llo10 • updated 2.1 years ago by davide risso830
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677
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How is the mean-variance plot calculated?
edaseq written 3.6 years ago by neverstop0 • updated 3.6 years ago by Wolfgang Huber13k
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How to use normalized values by EDASeq in edgeR?
edger edaseq written 4.3 years ago by rahilsethi0 • updated 4.3 years ago by Gordon Smyth39k
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False positives due to GC content correction - DESeq2
edaseq deseq2 written 5.4 years ago by Guest User12k • updated 5.4 years ago by Michael Love26k
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DESeq2 : Using Normalised ReadCount matrix from EDAseq in DESeq2
normalization edaseq deseq2 written 5.5 years ago by Guest User12k • updated 5.5 years ago by Michael Love26k
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EDASeq within normalization
normalization edaseq written 6.2 years ago by Catarina Almeida30 • updated 6.2 years ago by davide risso830
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673
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problem with aveLogCPM.default in edgeR
edger edaseq written 6.6 years ago by suzy.stiegelmeyer@syngenta.com40 • updated 6.6 years ago by Gordon Smyth39k
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Large logCPM values when using offsets in edgeR for normalization
sequencing edger cqn edaseq written 6.7 years ago by Ying W90 • updated 6.7 years ago by Gordon Smyth39k
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783
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using offsets from EDASeq and cqn for edgeR
cqn edaseq written 6.8 years ago by Gordon Smyth39k • updated 6.8 years ago by Kasper Daniel Hansen6.4k
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957
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using offsets from EDASeq and cqn
go edger cqn edaseq written 6.8 years ago by love150
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problem in reading bam files with EDASeq
rsamtools edaseq assign written 7.9 years ago by rcaloger500 • updated 7.9 years ago by davide risso830
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