3
votes
1
answer
144
views
1
answer
1
vote
1
answer
95
views
1
answer
Outputting batch-effect free normalized counts
edaseq ruvseq svaseq written 17 days ago by llo0 • updated 16 days ago by davide risso520
1
vote
1
answer
302
views
1
answer
2
votes
1
answer
434
views
1
answer
How is the mean-variance plot calculated?
edaseq written 18 months ago by neverstop0 • updated 18 months ago by Wolfgang Huber13k
6
votes
2
answers
868
views
2
answers
How to use normalized values by EDASeq in edgeR?
edger edaseq written 2.2 years ago by rahilsethi0 • updated 2.2 years ago by Gordon Smyth32k
0
votes
1
answer
629
views
1
answer
False positives due to GC content correction - DESeq2
edaseq deseq2 written 3.3 years ago by Guest User12k • updated 3.3 years ago by Michael Love15k
2
votes
1
answer
791
views
1
answer
DESeq2 : Using Normalised ReadCount matrix from EDAseq in DESeq2
normalization edaseq deseq2 written 3.4 years ago by Guest User12k • updated 3.4 years ago by Michael Love15k
0
votes
1
answer
785
views
1
answer
EDASeq within normalization
normalization edaseq written 4.1 years ago by Catarina Almeida30 • updated 4.1 years ago by davide risso520
0
votes
1
answer
434
views
1
answer
problem with aveLogCPM.default in edgeR
edger edaseq written 4.5 years ago by suzy.stiegelmeyer@syngenta.com40 • updated 4.5 years ago by Gordon Smyth32k
0
votes
1
answer
744
views
1
answer
0
votes
1
answer
929
views
1
answer
Large logCPM values when using offsets in edgeR for normalization
sequencing edger cqn edaseq written 4.7 years ago by Ying W90 • updated 4.7 years ago by Gordon Smyth32k
0
votes
1
answer
430
views
1
answer
using offsets from EDASeq and cqn for edgeR
cqn edaseq written 4.8 years ago by Gordon Smyth32k • updated 4.8 years ago by Kasper Daniel Hansen6.3k
0
votes
1
answer
564
views
1
answer
using offsets from EDASeq and cqn
go edger cqn edaseq written 4.8 years ago by love150
0
votes
2
answers
468
views
2
answers
problem in reading bam files with EDASeq
rsamtools edaseq assign written 5.9 years ago by rcaloger500 • updated 5.8 years ago by davide risso520
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