1
vote
1
answer
27
views
1
answer
Mean-Variance Plot for Normalised Counts
edaseq meanvarplot written 1 day ago by Dario Strbenac1.4k • updated 1 day ago by davide risso720
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votes
0
answers
26
views
0
answers
2
votes
2
answers
106
views
2
answers
0
votes
1
answer
148
views
1
answer
Incorporating 'offset' into edgeR pipeline
edger edaseq offset written 5 months ago by alakatos80 • updated 5 months ago by Aaron Lun19k
2
votes
1
answer
262
views
1
answer
6
votes
2
answers
358
views
2
answers
1
vote
1
answer
219
views
1
answer
Outputting batch-effect free normalized counts
edaseq ruvseq svaseq written 7 months ago by llo0 • updated 7 months ago by davide risso720
1
vote
1
answer
387
views
1
answer
2
votes
1
answer
716
views
1
answer
How is the mean-variance plot calculated?
edaseq written 2.1 years ago by neverstop0 • updated 2.1 years ago by Wolfgang Huber13k
6
votes
2
answers
1.0k
views
2
answers
How to use normalized values by EDASeq in edgeR?
edger edaseq written 2.8 years ago by rahilsethi0 • updated 2.8 years ago by Gordon Smyth33k
0
votes
1
answer
787
views
1
answer
False positives due to GC content correction - DESeq2
edaseq deseq2 written 3.9 years ago by Guest User12k • updated 3.9 years ago by Michael Love18k
2
votes
1
answer
965
views
1
answer
DESeq2 : Using Normalised ReadCount matrix from EDAseq in DESeq2
normalization edaseq deseq2 written 4.0 years ago by Guest User12k • updated 4.0 years ago by Michael Love18k
0
votes
1
answer
969
views
1
answer
EDASeq within normalization
normalization edaseq written 4.7 years ago by Catarina Almeida30 • updated 4.7 years ago by davide risso720
0
votes
1
answer
483
views
1
answer
problem with aveLogCPM.default in edgeR
edger edaseq written 5.1 years ago by suzy.stiegelmeyer@syngenta.com40 • updated 5.1 years ago by Gordon Smyth33k
0
votes
1
answer
859
views
1
answer
0
votes
1
answer
1.1k
views
1
answer
Large logCPM values when using offsets in edgeR for normalization
sequencing edger cqn edaseq written 5.3 years ago by Ying W90 • updated 5.2 years ago by Gordon Smyth33k
0
votes
1
answer
543
views
1
answer
using offsets from EDASeq and cqn for edgeR
cqn edaseq written 5.3 years ago by Gordon Smyth33k • updated 5.3 years ago by Kasper Daniel Hansen6.3k
0
votes
1
answer
676
views
1
answer
using offsets from EDASeq and cqn
go edger cqn edaseq written 5.3 years ago by love150
0
votes
2
answers
562
views
2
answers
problem in reading bam files with EDASeq
rsamtools edaseq assign written 6.4 years ago by rcaloger500 • updated 6.4 years ago by davide risso720
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