1
vote
1
answer
60
views
1
answer
EDASeq, RUVSeq and edgeR together
edger edaseq ruvseq written 26 days ago by zoppoli pietro10 • updated 25 days ago by davide risso750
1
vote
1
answer
75
views
1
answer
Mean-Variance Plot for Normalised Counts
edaseq meanvarplot written 4 months ago by Dario Strbenac1.4k • updated 4 months ago by davide risso750
0
votes
0
answers
67
views
0
answers
2
votes
2
answers
203
views
2
answers
0
votes
1
answer
198
views
1
answer
Incorporating 'offset' into edgeR pipeline
edger edaseq offset written 9 months ago by alakatos80 • updated 9 months ago by Aaron Lun21k
2
votes
1
answer
370
views
1
answer
6
votes
2
answers
458
views
2
answers
1
vote
1
answer
316
views
1
answer
Outputting batch-effect free normalized counts
edaseq ruvseq svaseq written 11 months ago by llo0 • updated 11 months ago by davide risso750
1
vote
1
answer
454
views
1
answer
2
votes
1
answer
932
views
1
answer
How is the mean-variance plot calculated?
edaseq written 2.4 years ago by neverstop0 • updated 2.4 years ago by Wolfgang Huber13k
6
votes
2
answers
1.1k
views
2
answers
How to use normalized values by EDASeq in edgeR?
edger edaseq written 3.2 years ago by rahilsethi0 • updated 3.2 years ago by Gordon Smyth35k
0
votes
1
answer
846
views
1
answer
False positives due to GC content correction - DESeq2
edaseq deseq2 written 4.2 years ago by Guest User12k • updated 4.2 years ago by Michael Love19k
2
votes
1
answer
1.1k
views
1
answer
DESeq2 : Using Normalised ReadCount matrix from EDAseq in DESeq2
normalization edaseq deseq2 written 4.3 years ago by Guest User12k • updated 4.3 years ago by Michael Love19k
0
votes
1
answer
1.1k
views
1
answer
EDASeq within normalization
normalization edaseq written 5.0 years ago by Catarina Almeida30 • updated 5.0 years ago by davide risso750
0
votes
1
answer
517
views
1
answer
problem with aveLogCPM.default in edgeR
edger edaseq written 5.4 years ago by suzy.stiegelmeyer@syngenta.com40 • updated 5.4 years ago by Gordon Smyth35k
0
votes
1
answer
912
views
1
answer
0
votes
1
answer
1.3k
views
1
answer
Large logCPM values when using offsets in edgeR for normalization
sequencing edger cqn edaseq written 5.6 years ago by Ying W90 • updated 5.6 years ago by Gordon Smyth35k
0
votes
1
answer
595
views
1
answer
using offsets from EDASeq and cqn for edgeR
cqn edaseq written 5.7 years ago by Gordon Smyth35k • updated 5.7 years ago by Kasper Daniel Hansen6.4k
0
votes
1
answer
737
views
1
answer
using offsets from EDASeq and cqn
go edger cqn edaseq written 5.7 years ago by love150
0
votes
2
answers
598
views
2
answers
problem in reading bam files with EDASeq
rsamtools edaseq assign written 6.8 years ago by rcaloger500 • updated 6.7 years ago by davide risso750
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