0
votes
1
answer
99
views
1
answer
GAGE: no essential member genes for some DE pathways
gage written 6 weeks ago by aurelie.nicolas0 • updated 6 weeks ago by Luo Weijun1.4k
0
votes
1
answer
107
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 8 weeks ago by snishtala030 • updated 7 weeks ago by Luo Weijun1.4k
0
votes
0
answers
90
views
0
answers
gage pca loadings
gage pca loadings written 12 weeks ago by MT0
0
votes
0
answers
150
views
0
answers
0
votes
0
answers
137
views
0
answers
0
votes
2
answers
203
views
2
answers
0
votes
1
answer
248
views
1
answer
Questions about Pathview, maybe also gage
gage pathview R written 11 months ago by ChIP-Tease0 • updated 6 months ago by bioinf0
0
votes
1
answer
165
views
1
answer
GAGE and Pathview from RNA-Seq: 'ref.idx' and 'samp.idx' when no replicates
gage pathview written 6 months ago by user3188830 • updated 6 months ago by Luo Weijun1.4k
1
vote
4
answers
275
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 10 months ago by rubi70 • updated 7 months ago by Guangchuang Yu650
0
votes
1
answer
201
views
1
answer
0
votes
1
answer
231
views
1
answer
1
vote
2
answers
226
views
2
answers
DESeq2 rlog as input for GAGE
gage deseq2 written 11 months ago by Tom10
0
votes
3
answers
395
views
3
answers
0
votes
4
answers
331
views
4
answers
Gage and setp argument
gage gsea written 13 months ago by peter.chernek0
0
votes
1
answer
350
views
1
answer
Using Gage and pathview with previously processed data
rnaseq gage pathview R kegg written 16 months ago by bsguida0 • updated 16 months ago by Luo Weijun1.4k
1
vote
2
answers
361
views
2
answers
0
votes
1
answer
365
views
1
answer
0
votes
0
answers
775
views
0
answers
2
votes
1
answer
1.1k
views
1
answer
GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error
gage summarizeoverlaps written 19 months ago by user3188830 • updated 19 months ago by Valerie Obenchain ♦♦ 6.1k
0
votes
4
answers
610
views
4
answers
0
votes
0
answers
290
views
0
answers
Detail of GAGE's esset.grp function
gage written 22 months ago by jackipchiho10
2
votes
1
answer
459
views
1
answer
Output from pathview does not seem to match input
gage pathview pathway analysis written 23 months ago by bdp0 • updated 23 months ago by Luo Weijun1.4k
0
votes
0
answers
470
views
0
answers
0
votes
4
answers
879
views
4
answers
Urgent: Do GAGE applicable for non model species?
gage written 2.0 years ago by jackipchiho10 • updated 2.0 years ago by amywingsze0
0
votes
1
answer
631
views
1
answer
GAGE/Pathview now support 3000 KEGG species and 19 GO species (with BioC 2.14)
go gage pathview written 3.1 years ago by Luo Weijun1.4k • updated 2.0 years ago by jackipchiho10
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