2
votes
5
answers
398
views
5
answers
0
votes
1
answer
121
views
1
answer
GAGE: no essential member genes for some DE pathways
gage written 3 months ago by aurelie.nicolas0 • updated 3 months ago by Luo Weijun1.4k
0
votes
1
answer
150
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 3 months ago by snishtala030 • updated 3 months ago by Luo Weijun1.4k
0
votes
0
answers
114
views
0
answers
gage pca loadings
gage pca loadings written 4 months ago by MT0
0
votes
0
answers
173
views
0
answers
0
votes
0
answers
168
views
0
answers
0
votes
2
answers
239
views
2
answers
0
votes
1
answer
272
views
1
answer
Questions about Pathview, maybe also gage
gage pathview R written 13 months ago by ChIP-Tease0 • updated 7 months ago by bioinf0
0
votes
1
answer
199
views
1
answer
GAGE and Pathview from RNA-Seq: 'ref.idx' and 'samp.idx' when no replicates
gage pathview written 8 months ago by user3188830 • updated 8 months ago by Luo Weijun1.4k
1
vote
4
answers
305
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 11 months ago by rubi70 • updated 9 months ago by Guangchuang Yu690
0
votes
1
answer
229
views
1
answer
0
votes
1
answer
263
views
1
answer
1
vote
2
answers
256
views
2
answers
DESeq2 rlog as input for GAGE
gage deseq2 written 13 months ago by Tom10
0
votes
3
answers
436
views
3
answers
0
votes
4
answers
350
views
4
answers
Gage and setp argument
gage gsea written 15 months ago by peter.chernek0
0
votes
1
answer
367
views
1
answer
Using Gage and pathview with previously processed data
rnaseq gage pathview R kegg written 18 months ago by bsguida0 • updated 18 months ago by Luo Weijun1.4k
1
vote
2
answers
387
views
2
answers
0
votes
1
answer
387
views
1
answer
0
votes
0
answers
838
views
0
answers
2
votes
1
answer
1.1k
views
1
answer
GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error
gage summarizeoverlaps written 21 months ago by user3188830 • updated 21 months ago by Valerie Obenchain ♦♦ 6.2k
0
votes
4
answers
633
views
4
answers
0
votes
0
answers
314
views
0
answers
Detail of GAGE's esset.grp function
gage written 2.0 years ago by jackipchiho10
2
votes
1
answer
483
views
1
answer
Output from pathview does not seem to match input
gage pathview pathway analysis written 2.1 years ago by bdp0 • updated 2.1 years ago by Luo Weijun1.4k
0
votes
0
answers
496
views
0
answers
0
votes
4
answers
935
views
4
answers
Urgent: Do GAGE applicable for non model species?
gage written 2.1 years ago by jackipchiho10 • updated 2.1 years ago by amywingsze0
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