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Are singscore scores comparable between gene sets?
gsva gsea geneset subtypes singscore written 7 days ago by Pietro • 10 • updated 6 days ago by Robert Castelo • 2.3k
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Qusage/nlme package for adding random effects in gene set enrichment analysis
qusage gsea written 8 days ago by Diana • 10
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Useful of Normal Enrichment Score (NES) in GSEA
gsea written 13 days ago by aboumarshal • 0
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DESeq2 log2FC shrink before GSEA or not?
rnaseq deseq2 gsea gene espression written 20 days ago by bmreilly • 0 • updated 19 days ago by Michael Love ♦ 22k
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Enrichment Analysis with only GeneSymbols
R rna-seq gsea scrna-seq written 23 days ago by hamza_karakurt • 0 • updated 23 days ago by Peter Langfelder • 1.8k
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gseaplot vertical line
clusterprofiler gsea written 4 months ago by abelsousa • 0 • updated 10 weeks ago by Bioconductor Community ♦♦ 0
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152
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GSEA using TFs as the gene set
gsea transcription factor binding site enrichment analysis written 4 months ago by tkapell • 0 • updated 4 months ago by lhuang7 • 30
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152
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Using TPM of a specific isoform as a phenotype for gene set enrichment analysis
rnaseq deseq2 gsea tpm salmon rna seq written 5 months ago by leo_CD • 0 • updated 4 months ago by Michael Love ♦ 22k
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gene set enrichment analysis
gsea gsa written 5 months ago by Bogdan • 550 • updated 5 months ago by Gordon Smyth ♦ 36k
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Warning in bayes fit in MAST GSEA
gsea mast bayesglm.fit written 6 months ago by santos22903 • 0
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304
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GSEA for RNA-seq analysis
limma gsea ttest preranked gsea written 7 months ago by imalumberjack • 0 • updated 7 months ago by Gordon Smyth ♦ 36k
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
chipseq job bioinformatician job rna-seq gsea python written 7 months ago by l.brown • 10
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fgsea p-values are mostly the same upon analysis
gsea fgsea sc-rnaseq written 8 months ago by atakanekiz • 20
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Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 9 months ago by csijst • 0 • updated 9 months ago by Michael Love ♦ 22k
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ReactomePA / Reactome: GSEA error message
reactome gsea reactomepa fgsea written 9 months ago by martin.busch • 0
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238
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Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 11 months ago by Aurora • 10 • updated 11 months ago by Gordon Smyth ♦ 36k
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Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 12 months ago by thomasjenner333 • 0 • updated 12 months ago by Guangchuang Yu • 1.1k
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GSVA for single sample
gsva gsea ssgsea written 13 months ago by jaison75 • 10
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329
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merging gseaResult objects
clusterprofiler gsea written 13 months ago by robmarin • 0 • updated 13 months ago by Guangchuang Yu • 1.1k
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Inconsistency of results GSEA clusterprofiler
clusterprofiler gsea written 14 months ago by Stane • 40
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306
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GSEA-class file (.cls) parsing error message
gsea written 14 months ago by snguyen268 • 0
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gseaplot() function of clusterProfiler went wrong
clusterprofiler gsea written 16 months ago by giuseppe0525 • 0
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GSEA using clusterProfiler
clusterprofiler gsea written 16 months ago by giuseppe0525 • 0
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468
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GSEA using clusterprofileR
clusterprofiler gsea written 17 months ago by sup230 • 10 • updated 17 months ago by assaron • 150
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BioQC R package issue with broad gmt files
R gsea gmt bioqc written 17 months ago by Seymoo • 0
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