0
votes
2
answers
65
views
2
answers
Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 28 days ago by csijst0 • updated 28 days ago by Michael Love18k
1
vote
0
answers
93
views
0
answers
1
vote
1
answer
100
views
1
answer
Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 11 weeks ago by Aurora10 • updated 11 weeks ago by Gordon Smyth34k
2
votes
1
answer
224
views
1
answer
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 4 months ago by thomasjenner3330 • updated 3 months ago by Guangchuang Yu1.0k
1
vote
2
answers
189
views
2
answers
GSVA for single sample
gsva gsea ssgsea written 5 months ago by jaison750
0
votes
1
answer
199
views
1
answer
merging gseaResult objects
clusterprofiler gsea written 5 months ago by robmarin0 • updated 5 months ago by Guangchuang Yu1.0k
1
vote
0
answers
208
views
0
answers
0
votes
0
answers
169
views
0
answers
0
votes
0
answers
264
views
0
answers
2
votes
1
answer
548
views
1
answer
2
votes
1
answer
285
views
1
answer
GSEA using clusterprofileR
clusterprofiler gsea written 9 months ago by sup23010 • updated 9 months ago by assaron150
0
votes
0
answers
159
views
0
answers
0
votes
1
answer
254
views
1
answer
1
vote
1
answer
327
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 10 months ago by Sanches0 • updated 10 months ago by Gordon Smyth34k
2
votes
0
answers
633
views
0
answers
0
votes
1
answer
811
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 11 months ago by siajunren0 • updated 11 months ago by Andrew_McDavid130
1
vote
1
answer
501
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 11 months ago by shawn.w.foley0 • updated 11 months ago by assaron150
0
votes
0
answers
313
views
0
answers
GSEA threshold question
clusterprofiler R gsea reactomepa written 13 months ago by bhgyu30
0
votes
1
answer
422
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 14 months ago by snishtala030 • updated 14 months ago by Luo Weijun1.4k
1
vote
1
answer
332
views
1
answer
0
votes
1
answer
431
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 16 months ago by predeus0 • updated 16 months ago by Lluís R370
1
vote
2
answers
799
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 3.4 years ago by Nemo80 • updated 16 months ago by predeus0
2
votes
1
answer
416
views
1
answer
0
votes
1
answer
494
views
1
answer
Statistic for GSA
gsea gsa concept written 17 months ago by Lluís R370 • updated 17 months ago by Pekka Kohonen190
2
votes
1
answer
391
views
1
answer
Direction aware fgsea test
gsea fgsea written 18 months ago by rubi90 • updated 18 months ago by assaron150
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