0
votes
1
answer
114
views
1
answer
1
vote
1
answer
196
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 21 days ago by Sanches0 • updated 20 days ago by Gordon Smyth31k
2
votes
0
answers
468
views
0
answers
0
votes
1
answer
544
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 8 weeks ago by siajunren0 • updated 8 weeks ago by Andrew_McDavid80
1
vote
1
answer
325
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 8 weeks ago by shawn.w.foley0 • updated 8 weeks ago by assaron110
0
votes
0
answers
176
views
0
answers
0
votes
1
answer
177
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 4 months ago by snishtala030 • updated 4 months ago by Luo Weijun1.4k
1
vote
1
answer
189
views
1
answer
0
votes
1
answer
208
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 6 months ago by predeus0 • updated 6 months ago by Lluís R270
1
vote
2
answers
555
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 2.6 years ago by Nemo60 • updated 6 months ago by predeus0
2
votes
1
answer
270
views
1
answer
0
votes
1
answer
263
views
1
answer
Statistic for GSA
gsea gsa concept written 7 months ago by Lluís R270 • updated 7 months ago by Pekka Kohonen180
2
votes
1
answer
214
views
1
answer
Direction aware fgsea test
gsea fgsea written 8 months ago by rubi70 • updated 8 months ago by assaron110
1
vote
4
answers
333
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 13 months ago by rubi70 • updated 10 months ago by Guangchuang Yu700
0
votes
1
answer
285
views
1
answer
0
votes
1
answer
263
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 13 months ago by sarah.blackstone77340 • updated 13 months ago by Guangchuang Yu700
1
vote
1
answer
799
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 13 months ago by EJ0 • updated 13 months ago by Michael Love13k
9
votes
3
answers
792
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 15 months ago by Matthias Z.20 • updated 15 months ago by Gordon Smyth31k
0
votes
4
answers
367
views
4
answers
Gage and setp argument
gage gsea written 16 months ago by peter.chernek0
1
vote
0
answers
306
views
0
answers
0
votes
3
answers
386
views
3
answers
gene set (enrichment) analysis
gsea gsa written 18 months ago by Bogdan470 • updated 18 months ago by Axel Klenk790
2
votes
2
answers
326
views
2
answers
1
vote
1
answer
313
views
1
answer
giving weight to DEG from limma output
limma gsea written 18 months ago by Shamim Sarhadi20 • updated 18 months ago by Aaron Lun16k
2
votes
2
answers
606
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 19 months ago by claire.n.levy10 • updated 19 months ago by Steve Lianoglou12k
13
votes
2
answers
1.2k
views
2
answers
Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 22 months ago by jacorvar20 • updated 22 months ago by Robert Castelo2.0k
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