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0
votes
1
answer
114
views
1
answer
Resolved- GSEAbase: goSlim function, pb with counts
go gsea goslim written 10 days ago by maeva.mollion • 0
1
vote
1
answer
196
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 21 days ago by Sanches • 0 • updated 20 days ago by Gordon Smyth ♦ 31k
2
votes
0
answers
468
views
0
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custom annotation for GO enrichment
annotation go clusterprofiler annotationforge gsea written 6 weeks ago by cabezasdelafuented • 10
0
votes
1
answer
544
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 8 weeks ago by siajunren • 0 • updated 8 weeks ago by Andrew_McDavid • 80
1
vote
1
answer
325
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 8 weeks ago by shawn.w.foley • 0 • updated 8 weeks ago by assaron • 110
0
votes
0
answers
176
views
0
answers
GSEA threshold question
clusterprofiler R gsea reactomepa written 3 months ago by bhgyu • 0
0
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1
answer
177
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1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 4 months ago by snishtala03 • 0 • updated 4 months ago by Luo Weijun • 1.4k
1
vote
1
answer
189
views
1
answer
Python Module from Kim and Volsky (2005) PAGE: Parametric Analysis of Gene Set Enrichment paper?
microarray pathway analysis differential gene expression gsea page written 6 months ago by danielle.newby • 0 • updated 6 months ago by Guido Hooiveld • 2.1k
0
votes
1
answer
208
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1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 6 months ago by predeus • 0 • updated 6 months ago by Lluís R • 270
1
vote
2
answers
555
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2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 2.6 years ago by Nemo • 60 • updated 6 months ago by predeus • 0
2
votes
1
answer
270
views
1
answer
EGSEA usage with microarray data (with vooma)?
gsea gene set testing limma voom egsea vooma written 8 months ago by Pekka Kohonen • 180
0
votes
1
answer
263
views
1
answer
Statistic for GSA
gsea gsa concept written 7 months ago by Lluís R • 270 • updated 7 months ago by Pekka Kohonen • 180
2
votes
1
answer
214
views
1
answer
Direction aware fgsea test
gsea fgsea written 8 months ago by rubi • 70 • updated 8 months ago by assaron • 110
1
vote
4
answers
333
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 13 months ago by rubi • 70 • updated 10 months ago by Guangchuang Yu • 700
0
votes
1
answer
285
views
1
answer
EGSEA: how does the program generate the value for the up or down regulation of gene sets or pathways
pathways gage gsea egsea written 12 months ago by yingchen • 0 • updated 12 months ago by Monther Alhamdoosh • 40
0
votes
1
answer
263
views
1
answer
ClusterProfiler can't load gmt file
clusterprofiler gsea gmt written 13 months ago by sarah.blackstone7734 • 0 • updated 13 months ago by Guangchuang Yu • 700
1
vote
1
answer
799
views
1
answer
GSEA preranked analysis downstream of DEseq2
rnaseq deseq2 gsea written 13 months ago by EJ • 0 • updated 13 months ago by Michael Love ♦ 13k
9
votes
3
answers
792
views
3
answers
GSEA-like enrichment score calculation
gseabase gsea enrichment analysis written 15 months ago by Matthias Z. • 20 • updated 15 months ago by Gordon Smyth ♦ 31k
0
votes
4
answers
367
views
4
answers
Gage and setp argument
gage gsea written 16 months ago by peter.chernek • 0
1
vote
0
answers
306
views
0
answers
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gene set analysis gsea ncrna gene set testing coexpression written 17 months ago by m.fletcher • 10
0
votes
3
answers
386
views
3
answers
gene set (enrichment) analysis
gsea gsa written 18 months ago by Bogdan • 470 • updated 18 months ago by Axel Klenk • 790
2
votes
2
answers
326
views
2
answers
A rational way for selecting the number of DEG with significant p-value for GSEA
gsea deg written 18 months ago by Shamim Sarhadi • 20 • updated 18 months ago by Gordon Smyth ♦ 31k
1
vote
1
answer
313
views
1
answer
giving weight to DEG from limma output
limma gsea written 18 months ago by Shamim Sarhadi • 20 • updated 18 months ago by Aaron Lun • 16k
2
votes
2
answers
606
views
6 follow
2
answers
Arguments for camera (gene set analysis)
camera gsea written 19 months ago by claire.n.levy • 10 • updated 19 months ago by Steve Lianoglou ♦ 12k
13
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2
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1.2k
views
2
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Best method/package for Gene Set Enrichment Analysis in microarrays?
gostats topgo goseq gsea gega written 22 months ago by jacorvar • 20 • updated 22 months ago by Robert Castelo • 2.0k
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