Showing: gsea • reset
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How to get t-statistic values using edgeR?
edger R gsea fgsea t-statistic written 5 weeks ago by Biologist • 70 • updated 5 weeks ago by Gordon Smyth ♦ 37k
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Are singscore scores comparable between gene sets?
gsva gsea geneset subtypes singscore written 3 months ago by Pietro • 20 • updated 3 months ago by Robert Castelo • 2.3k
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Qusage/nlme package for adding random effects in gene set enrichment analysis
qusage gsea written 3 months ago by Diana • 10
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Useful of Normal Enrichment Score (NES) in GSEA
gsea written 3 months ago by aboumarshal • 0
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DESeq2 log2FC shrink before GSEA or not?
rnaseq deseq2 gsea gene espression written 3 months ago by bmreilly • 0 • updated 3 months ago by Michael Love ♦ 23k
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Enrichment Analysis with only GeneSymbols
R rna-seq gsea scrna-seq written 3 months ago by hamza_karakurt • 30 • updated 3 months ago by Peter Langfelder • 2.1k
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gseaplot vertical line
clusterprofiler gsea written 7 months ago by abelsousa • 0 • updated 5 months ago by Bioconductor Community ♦♦ 0
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1
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193
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GSEA using TFs as the gene set
gsea transcription factor binding site enrichment analysis written 7 months ago by tkapell • 0 • updated 7 months ago by lhuang7 • 30
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202
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Using TPM of a specific isoform as a phenotype for gene set enrichment analysis
rnaseq deseq2 gsea tpm salmon rna seq written 8 months ago by leo_CD • 0 • updated 7 months ago by Michael Love ♦ 23k
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217
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gene set enrichment analysis
gsea gsa written 8 months ago by Bogdan • 550 • updated 8 months ago by Gordon Smyth ♦ 37k
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211
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Warning in bayes fit in MAST GSEA
gsea mast bayesglm.fit written 9 months ago by santos22903 • 0
2
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1
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361
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1
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GSEA for RNA-seq analysis
limma gsea ttest preranked gsea written 10 months ago by imalumberjack • 0 • updated 10 months ago by Gordon Smyth ♦ 37k
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
chipseq job bioinformatician job rna-seq gsea python written 10 months ago by l.brown • 10
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292
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fgsea p-values are mostly the same upon analysis
gsea fgsea sc-rnaseq written 11 months ago by atakanekiz • 20
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2
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295
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Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 12 months ago by csijst • 0 • updated 12 months ago by Michael Love ♦ 23k
1
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368
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ReactomePA / Reactome: GSEA error message
reactome gsea reactomepa fgsea written 12 months ago by martin.busch • 0
1
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1
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285
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Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 13 months ago by Aurora • 10 • updated 13 months ago by Gordon Smyth ♦ 37k
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Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 15 months ago by thomasjenner333 • 0 • updated 15 months ago by Guangchuang Yu • 1.1k
1
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2
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362
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GSVA for single sample
gsva gsea ssgsea written 16 months ago by jaison75 • 10
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374
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merging gseaResult objects
clusterprofiler gsea written 16 months ago by robmarin • 0 • updated 16 months ago by Guangchuang Yu • 1.1k
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372
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Inconsistency of results GSEA clusterprofiler
clusterprofiler gsea written 17 months ago by Stane • 40
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361
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GSEA-class file (.cls) parsing error message
gsea written 17 months ago by snguyen268 • 0
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545
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gseaplot() function of clusterProfiler went wrong
clusterprofiler gsea written 19 months ago by giuseppe0525 • 0
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1.5k
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GSEA using clusterProfiler
clusterprofiler gsea written 19 months ago by giuseppe0525 • 0
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1
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534
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1
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GSEA using clusterprofileR
clusterprofiler gsea written 20 months ago by sup230 • 30 • updated 20 months ago by assaron • 150
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