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ClusterProfiler GSEA with geneList
clusterprofiler gsea genelist written 5 months ago by lucap • 0 • updated 5 months ago by Ludwig Geistlinger • 50
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How to get t-statistic values using edgeR?
edger R gsea fgsea t-statistic written 7 months ago by Biologist • 70 • updated 7 months ago by Gordon Smyth ♦ 39k
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Are singscore scores comparable between gene sets?
gsva gsea geneset subtypes singscore written 9 months ago by Pietro • 20 • updated 9 months ago by Robert Castelo • 2.3k
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Qusage/nlme package for adding random effects in gene set enrichment analysis
qusage gsea written 9 months ago by Diana • 10
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Useful of Normal Enrichment Score (NES) in GSEA
gsea written 9 months ago by aboumarshal • 0
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DESeq2 log2FC shrink before GSEA or not?
rnaseq deseq2 gsea gene espression written 9 months ago by bmreilly • 0 • updated 9 months ago by Michael Love ♦ 26k
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Enrichment Analysis with only GeneSymbols
R rna-seq gsea scrna-seq written 9 months ago by hamza_karakurt • 30 • updated 9 months ago by Peter Langfelder • 2.3k
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gseaplot vertical line
clusterprofiler gsea written 13 months ago by abelsousa • 0 • updated 11 months ago by Bioconductor Community ♦♦ 0
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GSEA using TFs as the gene set
gsea transcription factor binding site enrichment analysis written 13 months ago by tkapell • 10 • updated 13 months ago by lhuang7 • 30
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Using TPM of a specific isoform as a phenotype for gene set enrichment analysis
rnaseq deseq2 gsea tpm salmon rna seq written 13 months ago by leo_CD • 0 • updated 13 months ago by Michael Love ♦ 26k
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gene set enrichment analysis
gsea gsa written 14 months ago by Bogdan • 580 • updated 14 months ago by Gordon Smyth ♦ 39k
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Warning in bayes fit in MAST GSEA
gsea mast bayesglm.fit written 15 months ago by santos22903 • 0
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GSEA for RNA-seq analysis
limma gsea ttest preranked gsea written 16 months ago by imalumberjack • 0 • updated 16 months ago by Gordon Smyth ♦ 39k
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
chipseq job bioinformatician job rna-seq gsea python written 16 months ago by l.brown • 10
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fgsea p-values are mostly the same upon analysis
gsea fgsea sc-rnaseq written 16 months ago by atakanekiz • 30
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Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 18 months ago by csijst • 0 • updated 18 months ago by Michael Love ♦ 26k
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ReactomePA / Reactome: GSEA error message
reactome gsea reactomepa fgsea written 18 months ago by martin.busch • 0
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Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 19 months ago by Aurora • 10 • updated 19 months ago by Gordon Smyth ♦ 39k
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Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 21 months ago by thomasjenner333 • 0 • updated 21 months ago by Guangchuang Yu • 1.1k
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GSVA for single sample
gsva gsea ssgsea written 22 months ago by jaison75 • 20
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432
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merging gseaResult objects
clusterprofiler gsea written 22 months ago by robmarin • 0 • updated 22 months ago by Guangchuang Yu • 1.1k
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Inconsistency of results GSEA clusterprofiler
clusterprofiler gsea written 23 months ago by Stane • 40
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GSEA-class file (.cls) parsing error message
gsea written 23 months ago by snguyen268 • 0
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gseaplot() function of clusterProfiler went wrong
clusterprofiler gsea written 2.1 years ago by giuseppe0525 • 0
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GSEA using clusterProfiler
clusterprofiler gsea written 2.1 years ago by giuseppe0525 • 0
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