1
vote
1
answer
82
views
1
answer
Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 4 weeks ago by Aurora10 • updated 4 weeks ago by Gordon Smyth33k
2
votes
1
answer
159
views
1
answer
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 10 weeks ago by thomasjenner3330 • updated 9 weeks ago by Guangchuang Yu990
1
vote
2
answers
167
views
2
answers
GSVA for single sample
gsva gsea ssgsea written 3 months ago by jaison750
0
votes
1
answer
176
views
1
answer
merging gseaResult objects
clusterprofiler gsea written 3 months ago by robmarin0 • updated 3 months ago by Guangchuang Yu990
1
vote
0
answers
183
views
0
answers
0
votes
0
answers
144
views
0
answers
0
votes
0
answers
230
views
0
answers
2
votes
1
answer
457
views
1
answer
2
votes
1
answer
254
views
1
answer
GSEA using clusterprofileR
clusterprofiler gsea written 7 months ago by sup23010 • updated 7 months ago by assaron140
0
votes
0
answers
145
views
0
answers
0
votes
1
answer
230
views
1
answer
1
vote
1
answer
309
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 8 months ago by Sanches0 • updated 8 months ago by Gordon Smyth33k
2
votes
0
answers
606
views
0
answers
0
votes
1
answer
758
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 10 months ago by siajunren0 • updated 10 months ago by Andrew_McDavid120
1
vote
1
answer
463
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 10 months ago by shawn.w.foley0 • updated 10 months ago by assaron140
0
votes
0
answers
291
views
0
answers
GSEA threshold question
clusterprofiler R gsea reactomepa written 11 months ago by bhgyu30
0
votes
1
answer
385
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 12 months ago by snishtala030 • updated 12 months ago by Luo Weijun1.4k
1
vote
1
answer
306
views
1
answer
0
votes
1
answer
384
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 14 months ago by predeus0 • updated 14 months ago by Lluís R310
1
vote
2
answers
755
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 3.2 years ago by Nemo70 • updated 14 months ago by predeus0
2
votes
1
answer
395
views
1
answer
0
votes
1
answer
460
views
1
answer
Statistic for GSA
gsea gsa concept written 15 months ago by Lluís R310 • updated 15 months ago by Pekka Kohonen190
2
votes
1
answer
371
views
1
answer
Direction aware fgsea test
gsea fgsea written 16 months ago by rubi90 • updated 16 months ago by assaron140
1
vote
4
answers
482
views
4
answers
GO slim data for GAGE GSEA analysis
go gage gsea written 21 months ago by rubi90 • updated 18 months ago by Guangchuang Yu990
0
votes
1
answer
448
views
1
answer
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