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0
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0
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51
views
0
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gseaplot vertical line
clusterprofiler gsea written 1 day ago by abelsousa • 0
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votes
1
answer
61
views
1
answer
GSEA using TFs as the gene set
gsea transcription factor binding site enrichment analysis written 6 days ago by tkapell • 0 • updated 5 days ago by lhuang7 • 20
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votes
1
answer
65
views
1
answer
Using TPM of a specific isoform as a phenotype for gene set enrichment analysis
rnaseq deseq2 gsea tpm salmon rna seq written 26 days ago by leo_CD • 0 • updated 22 days ago by Michael Love ♦ 20k
0
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1
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89
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1
answer
gene set enrichment analysis
gsea gsa written 5 weeks ago by Bogdan • 520 • updated 5 weeks ago by Gordon Smyth ♦ 35k
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0
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74
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Warning in bayes fit in MAST GSEA
gsea mast bayesglm.fit written 9 weeks ago by santos22903 • 0
2
votes
1
answer
219
views
1
answer
GSEA for RNA-seq analysis
limma gsea ttest preranked gsea written 3 months ago by imalumberjack • 0 • updated 3 months ago by Gordon Smyth ♦ 35k
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0
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97
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Job: 2 Postdoc Positions in computational epigenetics and non-coding RNA analysis (#CNPD08)
chipseq job bioinformatician job rna-seq gsea python written 3 months ago by l.brown • 10
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votes
0
answers
130
views
0
answers
fgsea p-values are mostly the same upon analysis
gsea fgsea sc-rnaseq written 3 months ago by atakanekiz • 20
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votes
2
answers
131
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2
answers
Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 4 months ago by csijst • 0 • updated 4 months ago by Michael Love ♦ 20k
1
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0
answers
194
views
0
answers
ReactomePA / Reactome: GSEA error message
reactome gsea reactomepa fgsea written 4 months ago by martin.busch • 0
1
vote
1
answer
159
views
1
answer
Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 6 months ago by Aurora • 10 • updated 6 months ago by Gordon Smyth ♦ 35k
2
votes
1
answer
381
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1
answer
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 8 months ago by thomasjenner333 • 0 • updated 8 months ago by Guangchuang Yu • 1.1k
1
vote
2
answers
239
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2
answers
GSVA for single sample
gsva gsea ssgsea written 9 months ago by jaison75 • 10
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1
answer
268
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1
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merging gseaResult objects
clusterprofiler gsea written 9 months ago by robmarin • 0 • updated 9 months ago by Guangchuang Yu • 1.1k
1
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0
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271
views
0
answers
Inconsistency of results GSEA clusterprofiler
clusterprofiler gsea written 10 months ago by Stane • 40
0
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0
answers
234
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0
answers
GSEA-class file (.cls) parsing error message
gsea written 10 months ago by snguyen268 • 0
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0
answers
362
views
0
answers
gseaplot() function of clusterProfiler went wrong
clusterprofiler gsea written 11 months ago by giuseppe0525 • 0
2
votes
1
answer
813
views
1
answer
GSEA using clusterProfiler
clusterprofiler gsea written 12 months ago by giuseppe0525 • 0
2
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1
answer
375
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1
answer
GSEA using clusterprofileR
clusterprofiler gsea written 13 months ago by sup230 • 10 • updated 13 months ago by assaron • 150
0
votes
0
answers
232
views
0
answers
BioQC R package issue with broad gmt files
R gsea gmt bioqc written 13 months ago by Seymoo • 0
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1
answer
314
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1
answer
Resolved- GSEAbase: goSlim function, pb with counts
go gsea goslim written 14 months ago by maeva.mollion • 0
1
vote
1
answer
374
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 14 months ago by Sanches • 0 • updated 14 months ago by Gordon Smyth ♦ 35k
2
votes
0
answers
721
views
0
answers
custom annotation for GO enrichment
annotation go clusterprofiler annotationforge gsea written 15 months ago by cabezasdelafuented • 10
2
votes
1
answer
1.0k
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 15 months ago by siajunren • 0 • updated 15 months ago by Andrew_McDavid • 150
1
vote
1
answer
575
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 15 months ago by shawn.w.foley • 0 • updated 15 months ago by assaron • 150
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