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0
votes
2
answers
65
views
2
answers
Issues in generating workable rank file for GSEA
gseabase deseq2 gsea pre-ranked gsea written 28 days ago by csijst • 0 • updated 28 days ago by Michael Love ♦ 18k
1
vote
0
answers
93
views
0
answers
ReactomePA / Reactome: GSEA error message
reactome gsea reactomepa fgsea written 28 days ago by martin.busch • 0
1
vote
1
answer
100
views
1
answer
Where is it possible to find gene sets in rdata format for GSEA ?
rattus norvegicus gsea written 11 weeks ago by Aurora • 10 • updated 11 weeks ago by Gordon Smyth ♦ 34k
2
votes
1
answer
224
views
1
answer
Clusterprofiler - MSigDB gene set analysis - Updated
clusterprofiler gsea msigdb written 4 months ago by thomasjenner333 • 0 • updated 3 months ago by Guangchuang Yu • 1.0k
1
vote
2
answers
189
views
2
answers
GSVA for single sample
gsva gsea ssgsea written 5 months ago by jaison75 • 0
0
votes
1
answer
199
views
1
answer
merging gseaResult objects
clusterprofiler gsea written 5 months ago by robmarin • 0 • updated 5 months ago by Guangchuang Yu • 1.0k
1
vote
0
answers
208
views
0
answers
Inconsistency of results GSEA clusterprofiler
clusterprofiler gsea written 6 months ago by Stane • 40
0
votes
0
answers
169
views
0
answers
GSEA-class file (.cls) parsing error message
gsea written 6 months ago by snguyen268 • 0
0
votes
0
answers
264
views
0
answers
gseaplot() function of clusterProfiler went wrong
clusterprofiler gsea written 7 months ago by giuseppe0525 • 0
2
votes
1
answer
548
views
1
answer
GSEA using clusterProfiler
clusterprofiler gsea written 8 months ago by giuseppe0525 • 0
2
votes
1
answer
285
views
1
answer
GSEA using clusterprofileR
clusterprofiler gsea written 9 months ago by sup230 • 10 • updated 9 months ago by assaron • 150
0
votes
0
answers
159
views
0
answers
BioQC R package issue with broad gmt files
R gsea gmt bioqc written 9 months ago by Seymoo • 0
0
votes
1
answer
254
views
1
answer
Resolved- GSEAbase: goSlim function, pb with counts
go gsea goslim written 10 months ago by maeva.mollion • 0
1
vote
1
answer
327
views
1
answer
two-color microarray - Gene Set Enrichment Analysis
gsea twocolor microarray written 10 months ago by Sanches • 0 • updated 10 months ago by Gordon Smyth ♦ 34k
2
votes
0
answers
633
views
0
answers
custom annotation for GO enrichment
annotation go clusterprofiler annotationforge gsea written 11 months ago by cabezasdelafuented • 10
0
votes
1
answer
811
views
1
answer
Intepretation of Z scores for gene set enrichment analysis in MAST
gsea scrna mast written 11 months ago by siajunren • 0 • updated 11 months ago by Andrew_McDavid • 130
1
vote
1
answer
501
views
1
answer
FGSEA only runs with <1000 permutations
gsea fgsea written 11 months ago by shawn.w.foley • 0 • updated 11 months ago by assaron • 150
0
votes
0
answers
313
views
0
answers
GSEA threshold question
clusterprofiler R gsea reactomepa written 13 months ago by bhgyu • 30
0
votes
1
answer
422
views
1
answer
GAGE or GSEABase using expression data and pathway.gmt file for mouse
pathways gage R gsea written 14 months ago by snishtala03 • 0 • updated 14 months ago by Luo Weijun • 1.4k
1
vote
1
answer
332
views
1
answer
Python Module from Kim and Volsky (2005) PAGE: Parametric Analysis of Gene Set Enrichment paper?
microarray pathway analysis differential gene expression gsea page written 15 months ago by danielle.newby • 0 • updated 15 months ago by Guido Hooiveld • 2.3k
0
votes
1
answer
431
views
1
answer
topGO - treating up- and down-regulated genes separately
topgo pathway analysis gsea written 16 months ago by predeus • 0 • updated 16 months ago by Lluís R • 370
1
vote
2
answers
799
views
2
answers
how to perform pre ranked GSEA in R?
microarray statistics R gsea written 3.4 years ago by Nemo • 80 • updated 16 months ago by predeus • 0
2
votes
1
answer
416
views
1
answer
EGSEA usage with microarray data (with vooma)?
gsea gene set testing limma voom egsea vooma written 18 months ago by Pekka Kohonen • 190
0
votes
1
answer
494
views
1
answer
Statistic for GSA
gsea gsa concept written 17 months ago by Lluís R • 370 • updated 17 months ago by Pekka Kohonen • 190
2
votes
1
answer
391
views
1
answer
Direction aware fgsea test
gsea fgsea written 18 months ago by rubi • 90 • updated 18 months ago by assaron • 150
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