2
votes
2
answers
54
views
2
answers
0
votes
1
answer
52
views
1
answer
1
vote
1
answer
56
views
1
answer
Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 10 days ago by mad6kj0 • updated 9 days ago by James W. MacDonald46k
0
votes
1
answer
55
views
1
answer
1
vote
1
answer
437
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 11 months ago by saumya.kumar0 • updated 15 days ago by Michael Love17k
1
vote
1
answer
88
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 4 weeks ago by VSM120 • updated 29 days ago by Michael Love17k
0
votes
1
answer
68
views
1
answer
tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 10 weeks ago by seyfim0 • updated 10 weeks ago by Michael Love17k
0
votes
1
answer
93
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 11 weeks ago by ginlucks0 • updated 11 weeks ago by Michael Love17k
3
votes
1
answer
293
views
1
answer
5
votes
1
answer
156
views
1
answer
1
vote
1
answer
190
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 4 months ago by nk0 • updated 4 months ago by Aaron Lun19k
3
votes
0
answers
305
views
0
answers
1
vote
1
answer
231
views
1
answer
0
votes
3
answers
527
views
3
answers
1
vote
1
answer
273
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 10 months ago by agetzler0 • updated 10 months ago by Michael Love17k
1
vote
1
answer
278
views
1
answer
1
vote
0
answers
500
views
0
answers
2
votes
1
answer
693
views
1
answer
0
votes
2
answers
1.0k
views
2
answers
1
vote
1
answer
531
views
1
answer
0
votes
1
answer
369
views
1
answer
salmon quantification - identical transcripts in fasta file
salmon written 13 months ago by dmr21020 • updated 13 months ago by James W. MacDonald46k
0
votes
1
answer
572
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 14 months ago by nschurch10 • updated 14 months ago by James W. MacDonald46k
2
votes
1
answer
602
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 14 months ago by seb.boegel0 • updated 14 months ago by Michael Love17k
7
votes
1
answer
739
views
6 follow
1
answer
0
votes
1
answer
392
views
1
answer
How to filter tximport output for edgeR?
edger rna-seq salmon tximport written 19 months ago by Peter0 • updated 19 months ago by Michael Love17k
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