Showing: salmonreset
1
vote
1
answer
37
views
1
answer
Cannot find header.json in salmon index directory
rna-seq salmon tximeta written 3 days ago by mico0 • updated 3 days ago by Michael Love26k
1
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1
answer
86
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1
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RNAseq PCA resembles subject-specific effect in a paired study design
deseq2 salmon written 12 days ago by guanwang17910 • updated 12 days ago by Kevin Blighe340
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1
answer
63
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1
answer
1
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1
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72
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1
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Normalizing counts using TIN metric before DESeq2
deseq2 salmon tximport written 8 weeks ago by hsbio10 • updated 8 weeks ago by Michael Love26k
2
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1
answer
92
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1
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Using duplication rate as a covariate
deseq2 salmon fastp written 9 weeks ago by rbutler0 • updated 9 weeks ago by Michael Love26k
2
votes
1
answer
116
views
1
answer
RNA-seq with Salmon and tximport
rna-seq salmon tximport written 11 weeks ago by woojoy140 • updated 11 weeks ago by James W. MacDonald51k
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0
answers
107
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0
answers
3
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1
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297
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1
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0
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1
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129
views
1
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Importing Salmon counts with tximport with host and virus genomes
salmon tximport written 4 months ago by rbenel0 • updated 4 months ago by Michael Love26k
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1
answer
120
views
1
answer
DESeq2 gives weird results
deseq2 salmon written 5 months ago by chipolino0 • updated 5 months ago by Michael Love26k
1
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1
answer
282
views
1
answer
rnaseqDTU log2fold change DEXSeq
dexseq salmon dtu rnaseqdtu foldchange written 10 months ago by fiona.dick9110 • updated 6 months ago by Michael Love26k
1
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1
answer
209
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1
answer
1
vote
1
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220
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1
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dtuScaledTPM vs lengthScaledTPM in DTU analysis
salmon tpm tximport dtu rnaseqdtu written 7 months ago by fiona.dick9110 • updated 7 months ago by Michael Love26k
2
votes
1
answer
181
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1
answer
3
votes
1
answer
169
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1
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quant.sf files and tximport, transcripts not recognized
salmon tximport written 7 months ago by Merlin 10 • updated 7 months ago by Michael Love26k
1
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1
answer
188
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1
answer
1
vote
1
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267
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1
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Normalisation for count data visualisation only
normalization deseq2 salmon tximport written 8 months ago by Alex So0 • updated 8 months ago by Michael Love26k
4
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1
answer
291
views
1
answer
1
vote
1
answer
275
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1
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Using Salmon and DESeq2 to compare metagenomic content between samples
deseq2 salmon written 10 months ago by kballa0 • updated 10 months ago by Michael Love26k
8
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2
answers
530
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2
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WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 11 months ago by maya.kappil10 • updated 11 months ago by Peter Langfelder2.3k
2
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1
answer
285
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1
answer
1
vote
1
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187
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1
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DEseq2 with different fastq read numbers after salmon
deseq2 salmon salmon rna seq written 11 months ago by danalvoronov10 • updated 11 months ago by Michael Love26k
0
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0
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215
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0
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quantifying piRNA and tRNA by Salmon
dge salmon written 12 months ago by lkianmehr0
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1
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245
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1
answer
2
votes
1
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399
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1
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