Showing: salmonreset
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dtuScaledTPM vs lengthScaledTPM in DTU analysis
salmon tpm tximport dtu rnaseqdtu written 22 days ago by fiona.dick9110 • updated 22 days ago by Michael Love23k
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quant.sf files and tximport, transcripts not recognized
salmon tximport written 23 days ago by Merlin 10 • updated 23 days ago by Michael Love23k
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Normalisation for count data visualisation only
normalization deseq2 salmon tximport written 6 weeks ago by Alex So0 • updated 6 weeks ago by Michael Love23k
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Using Salmon and DESeq2 to compare metagenomic content between samples
deseq2 salmon written 3 months ago by kballa0 • updated 3 months ago by Michael Love23k
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WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 4 months ago by maya.kappil0 • updated 4 months ago by Peter Langfelder1.8k
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118
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DEseq2 with different fastq read numbers after salmon
deseq2 salmon salmon rna seq written 5 months ago by danalvoronov10 • updated 5 months ago by Michael Love23k
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Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 11 months ago by mad6kj0 • updated 11 months ago by James W. MacDonald49k
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Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 11 months ago by andrewpountain0 • updated 11 months ago by Martin Morgan ♦♦ 23k
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tximport using for data generated from other tools
salmon tximport express written 23 months ago by saumya.kumar0 • updated 11 months ago by Michael Love23k
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processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 12 months ago by VSM120 • updated 12 months ago by Michael Love23k
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276
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tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 13 months ago by seyfim0 • updated 13 months ago by Michael Love23k
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use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 13 months ago by ginlucks0 • updated 13 months ago by Michael Love23k
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