Showing: salmonreset
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31
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Normalizing counts using TIN metric before DESeq2
deseq2 salmon tximport written 1 day ago by hsbio0 • updated 1 day ago by Michael Love25k
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1
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54
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Using duplication rate as a covariate
deseq2 salmon fastp written 8 days ago by rbutler0 • updated 8 days ago by Michael Love25k
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1
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74
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RNA-seq with Salmon and tximport
rna-seq salmon tximport written 22 days ago by woojoy140 • updated 22 days ago by James W. MacDonald51k
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73
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171
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106
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Importing Salmon counts with tximport with host and virus genomes
salmon tximport written 3 months ago by rbenel0 • updated 3 months ago by Michael Love25k
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104
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DESeq2 gives weird results
deseq2 salmon written 3 months ago by chipolino0 • updated 3 months ago by Michael Love25k
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1
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243
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rnaseqDTU log2fold change DEXSeq
dexseq salmon dtu rnaseqdtu foldchange written 8 months ago by fiona.dick9110 • updated 4 months ago by Michael Love25k
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180
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1
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1
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173
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dtuScaledTPM vs lengthScaledTPM in DTU analysis
salmon tpm tximport dtu rnaseqdtu written 5 months ago by fiona.dick9110 • updated 5 months ago by Michael Love25k
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158
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3
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152
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quant.sf files and tximport, transcripts not recognized
salmon tximport written 5 months ago by Merlin 10 • updated 5 months ago by Michael Love25k
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168
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230
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Normalisation for count data visualisation only
normalization deseq2 salmon tximport written 6 months ago by Alex So0 • updated 6 months ago by Michael Love25k
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1
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277
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1
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1
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1
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250
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Using Salmon and DESeq2 to compare metagenomic content between samples
deseq2 salmon written 8 months ago by kballa0 • updated 8 months ago by Michael Love25k
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2
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417
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WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 9 months ago by maya.kappil10 • updated 9 months ago by Peter Langfelder2.2k
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260
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1
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1
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172
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DEseq2 with different fastq read numbers after salmon
deseq2 salmon salmon rna seq written 9 months ago by danalvoronov10 • updated 9 months ago by Michael Love25k
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193
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quantifying piRNA and tRNA by Salmon
dge salmon written 10 months ago by lkianmehr0
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229
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2
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381
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2
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401
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474
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307
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Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 16 months ago by mad6kj0 • updated 16 months ago by James W. MacDonald51k
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