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Showing: salmonreset
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Using Salmon and DESeq2 to compare metagenomic content between samples
deseq2 salmon written 6 weeks ago by kballa0 • updated 6 weeks ago by Michael Love22k
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WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 12 weeks ago by maya.kappil0 • updated 12 weeks ago by Peter Langfelder1.7k
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DEseq2 with different fastq read numbers after salmon
deseq2 salmon salmon rna seq written 3 months ago by danalvoronov10 • updated 3 months ago by Michael Love22k
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Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 9 months ago by mad6kj0 • updated 9 months ago by James W. MacDonald49k
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Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 9 months ago by andrewpountain0 • updated 9 months ago by Martin Morgan ♦♦ 23k
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tximport using for data generated from other tools
salmon tximport express written 21 months ago by saumya.kumar0 • updated 9 months ago by Michael Love22k
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processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 10 months ago by VSM120 • updated 10 months ago by Michael Love22k
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tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 11 months ago by seyfim0 • updated 11 months ago by Michael Love22k
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use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 11 months ago by ginlucks0 • updated 11 months ago by Michael Love22k
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scater/scran with TPMs from Salmon - counts?
salmon scran scater written 13 months ago by nk0 • updated 13 months ago by Aaron Lun22k
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tximport error with salmon version
deseq2 salmon tximport written 19 months ago by agetzler0 • updated 19 months ago by Michael Love22k
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