Showing: salmonreset
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Importing Salmon counts with tximport with host and virus genomes
salmon tximport written 7 days ago by rbenel0 • updated 6 days ago by Michael Love24k
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65
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DESeq2 gives weird results
deseq2 salmon written 27 days ago by chipolino0 • updated 27 days ago by Michael Love24k
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169
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rnaseqDTU log2fold change DEXSeq
dexseq salmon dtu rnaseqdtu foldchange written 5 months ago by fiona.dick9110 • updated 8 weeks ago by Michael Love24k
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dtuScaledTPM vs lengthScaledTPM in DTU analysis
salmon tpm tximport dtu rnaseqdtu written 11 weeks ago by fiona.dick9110 • updated 11 weeks ago by Michael Love24k
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quant.sf files and tximport, transcripts not recognized
salmon tximport written 12 weeks ago by Merlin 10 • updated 12 weeks ago by Michael Love24k
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Normalisation for count data visualisation only
normalization deseq2 salmon tximport written 3 months ago by Alex So0 • updated 3 months ago by Michael Love24k
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Using Salmon and DESeq2 to compare metagenomic content between samples
deseq2 salmon written 5 months ago by kballa0 • updated 5 months ago by Michael Love24k
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WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 6 months ago by maya.kappil10 • updated 6 months ago by Peter Langfelder2.1k
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DEseq2 with different fastq read numbers after salmon
deseq2 salmon salmon rna seq written 7 months ago by danalvoronov10 • updated 7 months ago by Michael Love24k
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Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 13 months ago by mad6kj0 • updated 13 months ago by James W. MacDonald50k
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Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 13 months ago by andrewpountain0 • updated 13 months ago by Martin Morgan ♦♦ 23k
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tximport using for data generated from other tools
salmon tximport express written 2.1 years ago by saumya.kumar0 • updated 13 months ago by Michael Love24k
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processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 14 months ago by VSM120 • updated 14 months ago by Michael Love24k
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tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 15 months ago by seyfim0 • updated 15 months ago by Michael Love24k
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use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 15 months ago by ginlucks0 • updated 15 months ago by Michael Love24k
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