Showing: salmonreset
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RNAseq PCA resembles subject-specific effect in a paired study design
deseq2 salmon written 10 weeks ago by guanwang17910 • updated 10 weeks ago by Kevin Blighe400
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Normalizing counts using TIN metric before DESeq2
deseq2 salmon tximport written 4 months ago by hsbio10 • updated 4 months ago by Michael Love26k
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115
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Using duplication rate as a covariate
deseq2 salmon fastp written 4 months ago by rbutler0 • updated 4 months ago by Michael Love26k
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167
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RNA-seq with Salmon and tximport
rna-seq salmon tximport written 4 months ago by woojoy140 • updated 4 months ago by James W. MacDonald52k
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141
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3
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Importing Salmon counts with tximport with host and virus genomes
salmon tximport written 7 months ago by rbenel0 • updated 7 months ago by Michael Love26k
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149
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DESeq2 gives weird results
deseq2 salmon written 7 months ago by chipolino0 • updated 7 months ago by Michael Love26k
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344
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rnaseqDTU log2fold change DEXSeq
dexseq salmon dtu rnaseqdtu foldchange written 12 months ago by fiona.dick9110 • updated 8 months ago by Michael Love26k
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251
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273
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dtuScaledTPM vs lengthScaledTPM in DTU analysis
salmon tpm tximport dtu rnaseqdtu written 9 months ago by fiona.dick9110 • updated 9 months ago by Michael Love26k
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213
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3
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197
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quant.sf files and tximport, transcripts not recognized
salmon tximport written 9 months ago by Merlin 10 • updated 9 months ago by Michael Love26k
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214
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Normalisation for count data visualisation only
normalization deseq2 salmon tximport written 10 months ago by Alex So0 • updated 10 months ago by Michael Love26k
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322
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what should I do with many zero counts from Salmon quantification
normalization deseq2 R salmon written 11 months ago by lkianmehr0 • updated 11 months ago by Michael Love26k
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Using Salmon and DESeq2 to compare metagenomic content between samples
deseq2 salmon written 12 months ago by kballa0 • updated 12 months ago by Michael Love26k
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WGCNA following salmon/DESeq2
deseq2 wgcna salmon written 13 months ago by maya.kappil10 • updated 13 months ago by Peter Langfelder2.3k
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312
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207
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DEseq2 with different fastq read numbers after salmon
deseq2 salmon salmon rna seq written 13 months ago by danalvoronov10 • updated 13 months ago by Michael Love26k
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quantifying piRNA and tRNA by Salmon
dge salmon written 14 months ago by lkianmehr0
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263
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