2
votes
1
answer
110
views
1
answer
2
votes
2
answers
128
views
2
answers
0
votes
1
answer
117
views
1
answer
1
vote
1
answer
107
views
1
answer
Controlling for batch after Salmon-Tximport
deseq2 wgcna rna-seq salmon written 3 months ago by mad6kj0 • updated 3 months ago by James W. MacDonald47k
0
votes
1
answer
86
views
1
answer
Handling diploid vs haploid reference genomes in salmon > DESeq2 analysis
deseq2 salmon written 3 months ago by andrewpountain0 • updated 3 months ago by Martin Morgan ♦♦ 22k
1
vote
1
answer
588
views
1
answer
tximport using for data generated from other tools
salmon tximport express written 14 months ago by saumya.kumar0 • updated 3 months ago by Michael Love19k
1
vote
1
answer
154
views
1
answer
processing of (salmon) gene counts for eqtl analysis
tmm salmon gene length tximport eqtl written 3 months ago by VSM120 • updated 3 months ago by Michael Love19k
0
votes
1
answer
109
views
1
answer
tximport error with Salmon in DESeq2 pipeline
deseq2 salmon tximport written 5 months ago by seyfim0 • updated 5 months ago by Michael Love19k
0
votes
1
answer
144
views
1
answer
use tximport's countsFromAbundance when using DESeq2
rnaseq normalization deseq2 salmon tximport written 5 months ago by ginlucks0 • updated 5 months ago by Michael Love19k
5
votes
1
answer
587
views
1
answer
5
votes
1
answer
257
views
1
answer
1
vote
1
answer
254
views
1
answer
scater/scran with TPMs from Salmon - counts?
salmon scran scater written 7 months ago by nk0 • updated 7 months ago by Aaron Lun20k
3
votes
0
answers
393
views
0
answers
1
vote
1
answer
274
views
1
answer
0
votes
3
answers
561
views
3
answers
1
vote
1
answer
333
views
1
answer
tximport error with salmon version
deseq2 salmon tximport written 13 months ago by agetzler0 • updated 13 months ago by Michael Love19k
1
vote
1
answer
325
views
1
answer
1
vote
0
answers
570
views
0
answers
2
votes
1
answer
843
views
1
answer
0
votes
2
answers
1.2k
views
2
answers
1
vote
1
answer
630
views
1
answer
0
votes
1
answer
413
views
1
answer
salmon quantification - identical transcripts in fasta file
salmon written 16 months ago by dmr21020 • updated 16 months ago by James W. MacDonald47k
0
votes
1
answer
670
views
1
answer
tximport error reading salmon quantification files...
salmon tximport written 17 months ago by nschurch10 • updated 17 months ago by James W. MacDonald47k
2
votes
1
answer
697
views
1
answer
tximport - using hg38 with RefSeq (NM) and Gene Symbol
salmon hg38 tximport tx2gene.csv written 17 months ago by seb.boegel0 • updated 17 months ago by Michael Love19k
7
votes
1
answer
854
views
6 follow
1
answer
<prev • 29 results • page 1 of 2 • next >

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 170 users visited in the last hour